Pairwise Alignments

Query, 287 a.a., mechanosensitive ion channel protein from Vibrio cholerae E7946 ATCC 55056

Subject, 551 a.a., MscS mechanosensitive ion channel (RefSeq) from Shewanella sp. ANA-3

 Score =  195 bits (496), Expect = 2e-54
 Identities = 97/271 (35%), Positives = 158/271 (58%), Gaps = 6/271 (2%)

Query: 19  VNTWLTNNSDLLIQYGVNVISAI----LILFIGNLVVKGVAGSVANVLKKKEMD--KAVV 72
           V  WL    +  I +G  ++  +    +ILF+ +L  K     V+N +   +++  K + 
Sbjct: 276 VEQWLHTAKEQSINHGPTLVFKLFIFCMILFVASLAGKLAKKIVSNTVSNSKLNFSKLLQ 335

Query: 73  DFIHGLVRYTLFIIVLIAALSRIGVQTASVVAVIGAAGLAVGLALQGSLSNFAAGVLIVA 132
           DF   L    +F I ++ ALS++G++   ++A  G AG+ +G ALQ SLSNFA+G++I+ 
Sbjct: 336 DFFTSLSGKAVFTIGVLIALSQLGIELGPLLAGFGIAGVIIGFALQDSLSNFASGMMILI 395

Query: 133 FRPFKSGDYVEIGGVAGSVDSIQIFQTVLKSPDNKMVVVPNSAVIGGAITNYSRHETRRV 192
           +RP+  GD +   GV G V  + +  T +K+ DN+ +++PN+ + G  I N +    RRV
Sbjct: 396 YRPYDVGDLISAAGVTGRVSHMSLVSTTIKTLDNQRLIIPNNKIWGDTINNITAEHQRRV 455

Query: 193 DMVIGVSYKSDLQKTKRVLRETLEKDPRILKDPDMTIGVLTLADSSINFVVRPWCKTSDY 252
           DM  G+ Y  +++  + VL+  +E  P++ K P   I +  L +SS++F+VRPW K  DY
Sbjct: 456 DMTFGIGYGDNIEHAEAVLKSIVEAHPKVQKIPAPLIKLHVLGESSVDFIVRPWAKPEDY 515

Query: 253 WAVYFDSMQAIKEALDANGIEIPFPQMDVHL 283
           W VY+D  + +K   DA GI IPFPQ DVH+
Sbjct: 516 WDVYWDITREVKMRFDAEGISIPFPQRDVHI 546