Pairwise Alignments

Query, 298 a.a., iron-regulated virulence regulatory protein IrgB from Vibrio cholerae E7946 ATCC 55056

Subject, 304 a.a., Cyn operon transcriptional activator from Pseudomonas fluorescens FW300-N2E2

 Score = 83.2 bits (204), Expect = 7e-21
 Identities = 84/298 (28%), Positives = 137/298 (45%), Gaps = 19/298 (6%)

Query: 4   LSAVKAFHALCQHKSLTAAAKALEQPKSTLSRRLAQLEEDLGQSLLMRQGNRLTLTKAGE 63
           L+ ++AF  + + +S   AA++L +  S+L+R +  LEE  G  L  R  N +TLT+AGE
Sbjct: 6   LADLEAFATVARKRSFVVAARSLGRSPSSLTRVIQGLEERSGVKLFNRSANAVTLTEAGE 65

Query: 64  VFAVYSEQLLELANKSQEALQELNNQVTGELTLVVHPNLIRGWLSQVLDEFMQQHSTLKI 123
               ++ ++L+L  ++ E L  L+   TG +      +L    + Q++ ++ Q++  + +
Sbjct: 66  RLLPHAHRMLDLQREADEDLAGLSGLATGWIRFSAPQSLAHTVVPQLITQYSQRYPDVSV 125

Query: 124 RLLSQFQHSDEVFEPDLIIWIEHAAPMGYRKERLGY--WRYA--AYASPKYLAHRDKPTH 179
            ++      D V E  L   I  A P     + +GY  W Y+   YASP YL     PT 
Sbjct: 126 DVIFTDAAVDPV-EGKLDFSIRGAFPQS--SDLIGYPLWSYSRYLYASPGYLERCGLPTS 182

Query: 180 PRELIHHPWIDFIACR-RAELELHHP-EFGSYSLPALESRLQSDNLAMQADAIAKGRGIG 237
              L  H  I   A R   E     P + GS+ +   + R  S     QA A+A G GI 
Sbjct: 183 IEALEQHALILHTAPRILKEWNFRGPGQAGSFRVHP-KFRFSSGAAVFQA-ALA-GAGIA 239

Query: 238 LLPTWFANGFETAHPGSLIPCVNGWQ-----SQPTEINCFYPLGRHPLRLRLFIDALR 290
            L  W A     A  G L+     ++      +   ++  YP G  PLR++  +D +R
Sbjct: 240 RLADWLAEPEVAA--GRLVRVFPEYKLTSSTGEDPRMHAVYPAGNLPLRVKNLLDMIR 295