Pairwise Alignments

Query, 298 a.a., iron-regulated virulence regulatory protein IrgB from Vibrio cholerae E7946 ATCC 55056

Subject, 307 a.a., transcriptional regulator, LysR family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 87.0 bits (214), Expect = 5e-22
 Identities = 77/302 (25%), Positives = 133/302 (44%), Gaps = 16/302 (5%)

Query: 1   MQDLSAVKAFHALCQHKSLTAAAKALEQPKSTLSRRLAQLEEDLGQSLLMRQGNRLTLTK 60
           M  L A K F  + +  S+  AA+ L+  +S ++R L+++EE  G  LL R   RL+LT 
Sbjct: 1   MDRLEAAKVFVTIVERGSMIGAAEVLDMSRSMVTRYLSEMEEWSGARLLHRSTRRLSLTS 60

Query: 61  AGEVFAVYSEQLLELANKSQEALQELNNQVTGELTLVVHPNLIRGWLSQVLDEFMQQHST 120
           AGE    Y ++LLELA +        + Q  G L +     +    L  V+  ++ Q+  
Sbjct: 61  AGEQVLDYCQRLLELAQEVPAVSHAQSAQPRGLLRISCSQFMAHLILPTVVRPYLAQYPQ 120

Query: 121 LKIRLLSQFQHSDEVFEP-DLIIWIEHAAPMGYRKERLGYWRYAAYASPKYLAHRDKPTH 179
             +      Q  D V E  D+ I I +         RLG       A+P+YLA       
Sbjct: 121 ASVNFHVSSQTVDLVAERIDMAIRITNELDPSLIARRLGECESVVCAAPRYLASHSPIIQ 180

Query: 180 PRELIHHPWIDF-----IACRRAELE--LHHPEFGS----YSLPALESRLQSDNLAMQAD 228
           P +L  H  + +     +  R  ++   + HP+  S    +++P ++  L +++  +  +
Sbjct: 181 PEDLTRHNCLTYSYFGDVMWRFTQINHLVTHPDGKSAGQQFNIP-VKGNLSANDSMVVLN 239

Query: 229 AIAKGRGIGLLPTWFANGFETAHPGSLIPCVNGWQSQPTEINCFYPLGRH-PLRLRLFID 287
           A   G GI + P W    +   + G L+P +  ++ Q   +   Y   +H    LR+ +D
Sbjct: 240 ATLAGEGIAMQPVWAVKSY--LNSGELVPLLRDFKPQSLGVYGVYQSRKHMQPTLRVMMD 297

Query: 288 AL 289
            L
Sbjct: 298 ML 299