Pairwise Alignments

Query, 298 a.a., iron-regulated virulence regulatory protein IrgB from Vibrio cholerae E7946 ATCC 55056

Subject, 312 a.a., transcriptional regulator, LysR family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 88.6 bits (218), Expect = 2e-22
 Identities = 71/300 (23%), Positives = 131/300 (43%), Gaps = 9/300 (3%)

Query: 4   LSAVKAFHALCQHKSLTAAAKALEQPKSTLSRRLAQLEEDLGQSLLMRQGNRLTLTKAGE 63
           L  +  F  + +  S +AAA+ L   KS +S ++A LE  LG  L+ R    L+LT+AG 
Sbjct: 5   LEPIAIFTHVARAGSFSAAARRLGISKSKVSTQVADLEHRLGVQLIQRTTRSLSLTEAGH 64

Query: 64  VFAVYSEQLLELANKSQEALQELNNQVTGELTLVVHPNLIRGWLSQVLDEFMQQHSTLKI 123
           +  +  E+LL  A ++  ++  LN+   G L + +  +     +   L  FM +H  L++
Sbjct: 65  LLYLQGEELLRDAEQAIASVHNLNDATRGVLKVGISQSFGAMHIIPALPSFMAKHPELEL 124

Query: 124 RLLSQFQHSDEVFEP--DLIIWIEHAAPMGYRKERLGYWRYAAYASPKYLAHRDKPTHPR 181
           + +S   H  +V     DL++ +    P+G     L   ++   ASP Y+A   +P+ P 
Sbjct: 125 Q-VSLLDHKVDVVSEGLDLLLTMSEQLPLGMVARPLMKCQFLLVASPDYIAKHGEPSRPE 183

Query: 182 ELIHHPWIDFIACRRAELELHHPEFGSYSLPALESRLQSDNLAMQADAIAKGRGIGLLPT 241
           +L+ H  + +             +   Y    +    + DN      A   G G+  L +
Sbjct: 184 QLVDHNCLVYQGEWHEHSMWQFKKGDDYCEIGVSGNFRVDNAPALKSAAISGLGVVYLAS 243

Query: 242 WFANGFETAHPGSLIPCVNGWQ-SQPTEINCFYPLGRH-PLRLRLFIDALRQ--ARPDEW 297
           +     +    G+L+P +  WQ +    +   YP  +H   ++  FI+ ++     P  W
Sbjct: 244 YLME--DEIAKGTLVPLLKDWQLTHHLPLQAVYPRRKHLAPKVSAFIEFIKDHIGNPPYW 301