Pairwise Alignments

Query, 298 a.a., iron-regulated virulence regulatory protein IrgB from Vibrio cholerae E7946 ATCC 55056

Subject, 310 a.a., transcriptional regulator, LysR family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 91.3 bits (225), Expect = 3e-23
 Identities = 81/299 (27%), Positives = 135/299 (45%), Gaps = 9/299 (3%)

Query: 3   DLSAVKAFHALCQHKSLTAAAKALEQPKSTLSRRLAQLEEDLGQSLLMRQGNRLTLTKAG 62
           DL+ V+ F  + +  S T AAKAL   K+T+SR++A+LE D G  LL R    L LT+AG
Sbjct: 2   DLNRVQIFAQVVEQGSFTGAAKALGLTKATVSRKIAELEADTGTQLLFRTTRALKLTEAG 61

Query: 63  EVFAVYSEQLLELANKSQEALQELNNQVTGELTLVVHPNLIRGWLSQVLDEFMQQHSTLK 122
             +     ++L     ++  L      + G L +V    L + +L  +  +F+  +  + 
Sbjct: 62  SSYYNRINKILSDLQSAENQLSAHQQLIKGNLKIVCPIELGQLFLGPIFAKFLTLYPDIT 121

Query: 123 IRLLSQFQHSDEVFEP-DLIIWIEHAAPMGYRKERLGYWRYAAYASPKYLAHRDKPTHPR 181
           I      +  D + E  DL+  I  +     +   L     +  ASPKYLA    P  P+
Sbjct: 122 IDAELTNRKVDVIEEGIDLLFQIADSHDSRLQSYSLVNAYKSLMASPKYLAEHGTPKVPQ 181

Query: 182 ELIHHPWIDFIACRRAELELHHPEFGSYSLPALE--SRLQSDNLAMQADAIAKGRGIGLL 239
           +L  H     I  + A +E     F   S   +E  ++L  +N+ +  +A   G GI  +
Sbjct: 182 DLAKH---KAIRLQSAHIEGAWKLFDGKSWVVIEPVTQLTVNNVTIAREAAIAGLGITAV 238

Query: 240 PTWFANGFETAHPGSLIPCVNGWQSQPTEINCFYPLGRH-PLRLRLFIDALRQARPDEW 297
           P+  A   E    G L+P ++ +    T++   YP   + P + R+FI+ +  A    W
Sbjct: 239 PSIIAQ--EAVEKGYLVPLLDDYPMVQTKVVLSYPKRAYLPRKYRVFIEFIYAALFKRW 295