Pairwise Alignments

Query, 243 a.a., 16S rRNA (uracil(1498)-N(3))-methyltransferase from Vibrio cholerae E7946 ATCC 55056

Subject, 239 a.a., Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) from Pseudomonas fluorescens FW300-N2E2

 Score =  211 bits (536), Expect = 1e-59
 Identities = 115/241 (47%), Positives = 158/241 (65%), Gaps = 3/241 (1%)

Query: 1   MRIPRIYHPEPIHQLGTVALSEDAAGHIGRVLRMQAGQEVLLFDGLGAEFPAVISEVGKK 60
           MR+ R +   P+  LG   L E  A +IGRVLRM  G  V +FDG G EF   ++EVGKK
Sbjct: 1   MRLSRFFIDAPL-SLGDHELPEAQAHYIGRVLRMAEGDAVQVFDGSGQEFRGTLAEVGKK 59

Query: 61  QVLVNITERVENSIESPLDLHLGQVISRGDKMEFTIQKSVELGVTTITPLLSERCGVKLD 120
           +V V + E+     ESPL +HLGQ +SRG++M++ IQK+ ELGV+ ITP+ SERC V+L 
Sbjct: 60  RVRVQLDEQFAGQPESPLRIHLGQGLSRGERMDWAIQKATELGVSEITPIFSERCEVRLK 119

Query: 121 EKRFEKKIQQWQKIAISACEQCGRNTVPEIRPIMDLEAWCAEPTEALKLNLHPRAKYSLN 180
           ++R +K++  W+++AISACEQCGR++VP I P + L  W  +    LKL LHP A+  L 
Sbjct: 120 DERADKRLLHWRQVAISACEQCGRSSVPVIHPPLLLADWLKQTEAELKLVLHPVAE-PLA 178

Query: 181 TLPTPVSKVRLLIGPEGGLSAEEIDMTRRYQFEETLLGPRVLRTETAALTAIAALQVRFG 240
           +   P S +  LIGPEGGLS  E++  +   ++   LGPRVLRTETA + A+A  Q  +G
Sbjct: 179 SHDKP-STLAFLIGPEGGLSDAEVEQAKTAGYQAARLGPRVLRTETAPVVALAVAQQLWG 237

Query: 241 D 241
           D
Sbjct: 238 D 238