Pairwise Alignments

Query, 243 a.a., 16S rRNA (uracil(1498)-N(3))-methyltransferase from Vibrio cholerae E7946 ATCC 55056

Subject, 239 a.a., Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) from Pseudomonas fluorescens FW300-N1B4

 Score =  204 bits (520), Expect = 1e-57
 Identities = 112/241 (46%), Positives = 155/241 (64%), Gaps = 3/241 (1%)

Query: 1   MRIPRIYHPEPIHQLGTVALSEDAAGHIGRVLRMQAGQEVLLFDGLGAEFPAVISEVGKK 60
           MR+ R +   P+   G   L E  A +I RVLRM  G  V LFDG G EF   ++EVGKK
Sbjct: 1   MRLSRFFIDAPL-STGEHELPEAQAHYISRVLRMAEGDAVQLFDGSGHEFRGTLAEVGKK 59

Query: 61  QVLVNITERVENSIESPLDLHLGQVISRGDKMEFTIQKSVELGVTTITPLLSERCGVKLD 120
           +V+V I E     +ES L +HLGQ +SRG++M++ IQK+ ELGV+ ITP+ ++RC V+L 
Sbjct: 60  RVVVQIDESFAGQVESSLAVHLGQGLSRGERMDWAIQKATELGVSEITPIFTDRCEVRLK 119

Query: 121 EKRFEKKIQQWQKIAISACEQCGRNTVPEIRPIMDLEAWCAEPTEALKLNLHPRAKYSLN 180
           ++R +K++  W+++AISACEQCGR++VP I P + L  W  +    LKL LHP A+  L 
Sbjct: 120 DERADKRLMHWRQVAISACEQCGRSSVPVIHPPLLLADWLKQTEAELKLVLHPVAE-PLV 178

Query: 181 TLPTPVSKVRLLIGPEGGLSAEEIDMTRRYQFEETLLGPRVLRTETAALTAIAALQVRFG 240
           +   P + +  LIGPEGGLS  E++  +   F    LGPRVLRTETA + A+A  Q  +G
Sbjct: 179 SHAKPAT-LAFLIGPEGGLSDAEVEQAKAGGFHAARLGPRVLRTETAPVVALAVAQQLWG 237

Query: 241 D 241
           D
Sbjct: 238 D 238