Pairwise Alignments

Query, 243 a.a., 16S rRNA (uracil(1498)-N(3))-methyltransferase from Vibrio cholerae E7946 ATCC 55056

Subject, 245 a.a., 16S ribosomal RNA methyltransferase RsmE from Sinorhizobium meliloti 1021

 Score = 92.8 bits (229), Expect = 6e-24
 Identities = 66/245 (26%), Positives = 117/245 (47%), Gaps = 12/245 (4%)

Query: 2   RIPRIYHPEPIHQLGTVALSEDAAGHIGRVLRMQAGQEVLLFDGLGAEFPAVISEVGKKQ 61
           R+ R++    +H       + +   ++  VLR+  G  +L+F+G   E+ A I+   +KQ
Sbjct: 6   RMQRLFIENALHAGAKHEATREQFNYLINVLRLGEGSSLLVFNGRDGEWRAEIAMPSRKQ 65

Query: 62  VLVNITERVENSIESPLDLHLGQVISRGDKMEFTIQKSVELGVTTITPLLSERCGVKLDE 121
            ++   E+      +P DL       +  ++++ +QK+VE+G   + P++++    K+  
Sbjct: 66  AVLVAVEQTRPQ-PAPCDLVYLFAPLKVGRLDYLVQKAVEMGAGVLQPVMTQHVQGKIGS 124

Query: 122 KRFEKKIQQWQKIAISACEQCGRNTVPEIRPIMDLEAWCAEPTEALKLNLHPRAKYSLNT 181
                 +++ +   I A EQCG   +P +     LE    +     ++        S N 
Sbjct: 125 ------LERVRANVIEAAEQCGVLGIPAVEEPRKLEDLLIDWPRDRRIVFCDEGNDSQNP 178

Query: 182 LPT----PVSKVRLLIGPEGGLSAEEIDMTRRYQFEETL-LGPRVLRTETAALTAIAALQ 236
           LP        ++ LLIGPEGG S  E D+ R   F   + LGPR+LR +TAA+ A+A +Q
Sbjct: 179 LPILEGIAERRLALLIGPEGGFSEAERDLLRSRDFVTAIPLGPRILRADTAAVAAMAVIQ 238

Query: 237 VRFGD 241
              GD
Sbjct: 239 ATLGD 243