Pairwise Alignments

Query, 243 a.a., 16S rRNA (uracil(1498)-N(3))-methyltransferase from Vibrio cholerae E7946 ATCC 55056

Subject, 251 a.a., 16S rRNA (uracil(1498)-N(3))-methyltransferase from Rhodopseudomonas palustris CGA009

 Score = 80.5 bits (197), Expect = 3e-20
 Identities = 72/261 (27%), Positives = 118/261 (45%), Gaps = 41/261 (15%)

Query: 2   RIPRIYHPEPIHQLGTVALSEDAAGHIGRVLRMQAGQEVLLFDGLGAEFPAVISEVGKKQ 61
           R PR++    +     V L  D + ++G VLR+ AG  VL F+G   E+ A I+   K+ 
Sbjct: 7   RSPRLFVDAALAPGAQVPLERDQSNYLGNVLRLGAGAAVLAFNGRDGEWRATIAG-RKRP 65

Query: 62  VLVNITERVENSIESPLDLHLGQVISRGDKMEFTIQKSVELGVTTITPLLSERCGV-KLD 120
             + + E+       P D+       +  ++++  QK+VE+G   + P+L++   V +L+
Sbjct: 66  EALEVAEQTRPQDRLP-DVAYVFAPLKHARLDYMAQKAVEMGAGRLQPVLTQHTQVHRLN 124

Query: 121 EKRFEKKIQQWQKIAISACEQCGRNTVPEI-RPI------------------MDLEAWCA 161
             R    +       I A EQCG  ++ E+  PI                   D +A  A
Sbjct: 125 TDRMRANV-------IEAAEQCGILSLAEVGEPIGLDRFLAGRANGERLLVFCDEDAEIA 177

Query: 162 EPTEALKLNLHPRAKYSLNTLPTPVSKVRLLIGPEGGLSAEE-IDMTRRYQFEETLLGPR 220
           +P  AL+      A+            V LL+GPEGG S EE   + ++       LGPR
Sbjct: 178 DPVAALQAARDAAAR-----------GVDLLVGPEGGFSTEERALLLKQPAILRLALGPR 226

Query: 221 VLRTETAALTAIAALQVRFGD 241
           ++R +TAA+ A+  +Q   GD
Sbjct: 227 IMRADTAAVAALTLVQAVLGD 247