Pairwise Alignments

Query, 243 a.a., 16S rRNA (uracil(1498)-N(3))-methyltransferase from Vibrio cholerae E7946 ATCC 55056

Subject, 243 a.a., hypothetical protein (RefSeq) from Shewanella loihica PV-4

 Score =  300 bits (768), Expect = 2e-86
 Identities = 154/242 (63%), Positives = 182/242 (75%)

Query: 1   MRIPRIYHPEPIHQLGTVALSEDAAGHIGRVLRMQAGQEVLLFDGLGAEFPAVISEVGKK 60
           MRIPRIY          + L E+AAGH+GRVLRM AG+++ LF+G G  +   I    KK
Sbjct: 1   MRIPRIYQLGNYDLNQQLMLDEEAAGHVGRVLRMGAGEQLELFNGDGHNYLTEIVTASKK 60

Query: 61  QVLVNITERVENSIESPLDLHLGQVISRGDKMEFTIQKSVELGVTTITPLLSERCGVKLD 120
            V V +  +  N  ESPL+LHLGQVISRGD+M+FT+QKSVELGV TITPL SERCGVKL 
Sbjct: 61  NVEVRVLSKEANDNESPLNLHLGQVISRGDRMDFTLQKSVELGVNTITPLFSERCGVKLT 120

Query: 121 EKRFEKKIQQWQKIAISACEQCGRNTVPEIRPIMDLEAWCAEPTEALKLNLHPRAKYSLN 180
            +R EKKIQQWQKI ISACEQ GR+TVPE+RP M L+ WC E T+ALKLNLHPRA + +N
Sbjct: 121 GERLEKKIQQWQKIVISACEQSGRSTVPEVRPAMQLDDWCGEATQALKLNLHPRADHGIN 180

Query: 181 TLPTPVSKVRLLIGPEGGLSAEEIDMTRRYQFEETLLGPRVLRTETAALTAIAALQVRFG 240
            L     +VRLLIGPEGGLS +EI MT  + F + LLGPRVLRTETAALTAI+ALQ++FG
Sbjct: 181 GLVMETPRVRLLIGPEGGLSPQEIAMTETHAFTDVLLGPRVLRTETAALTAISALQLKFG 240

Query: 241 DL 242
           DL
Sbjct: 241 DL 242