Pairwise Alignments

Query, 243 a.a., 16S rRNA (uracil(1498)-N(3))-methyltransferase from Vibrio cholerae E7946 ATCC 55056

Subject, 243 a.a., conserved hypothetical protein TIGR00046 (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  313 bits (802), Expect = 2e-90
 Identities = 157/243 (64%), Positives = 188/243 (77%)

Query: 1   MRIPRIYHPEPIHQLGTVALSEDAAGHIGRVLRMQAGQEVLLFDGLGAEFPAVISEVGKK 60
           MR+PRIY P+P+     + L ED A HIG+VLRM  G+++ LF+G G ++ A I +  KK
Sbjct: 1   MRVPRIYQPQPLAVNQQLNLDEDGAAHIGKVLRMGNGEQISLFNGDGHDYLAEIIDAAKK 60

Query: 61  QVLVNITERVENSIESPLDLHLGQVISRGDKMEFTIQKSVELGVTTITPLLSERCGVKLD 120
            V V +     N  ESPL+LHLGQVISRGD+MEFTIQKSVELGV TITPL S+RCGVKL 
Sbjct: 61  SVTVKVLSCEANPSESPLNLHLGQVISRGDRMEFTIQKSVELGVNTITPLFSDRCGVKLS 120

Query: 121 EKRFEKKIQQWQKIAISACEQCGRNTVPEIRPIMDLEAWCAEPTEALKLNLHPRAKYSLN 180
            +R +KKIQQWQKI ISACEQ GR+ VP +RP M+L+ WC+EPT ALKLNLHPRA + +N
Sbjct: 121 GERLDKKIQQWQKIVISACEQSGRSQVPVVRPAMELQQWCSEPTSALKLNLHPRAAHGIN 180

Query: 181 TLPTPVSKVRLLIGPEGGLSAEEIDMTRRYQFEETLLGPRVLRTETAALTAIAALQVRFG 240
            L    ++VRLLIGPEGGLSAEEI MT  +QF + LLGPRVLRTETA+LTAI ALQ+RFG
Sbjct: 181 GLDLSHTRVRLLIGPEGGLSAEEIAMTETHQFTDVLLGPRVLRTETASLTAITALQLRFG 240

Query: 241 DLG 243
           DLG
Sbjct: 241 DLG 243