Pairwise Alignments

Query, 243 a.a., 16S rRNA (uracil(1498)-N(3))-methyltransferase from Vibrio cholerae E7946 ATCC 55056

Subject, 247 a.a., RNA methyltransferase, RsmE family from Sphingomonas koreensis DSMZ 15582

 Score = 94.0 bits (232), Expect = 3e-24
 Identities = 79/245 (32%), Positives = 119/245 (48%), Gaps = 18/245 (7%)

Query: 4   PRIYHPEPIHQLGTVALSEDAAGH-IGRVLRMQAGQEVLLFDGLGAEFPAVISEVGKKQV 62
           PR++  EP    G +   +   GH +  V+R+++G  V LFD    E+ AV +EV K+ V
Sbjct: 13  PRLF-VEPALTEGELRRIDGPQGHYLASVMRLKSGDPVKLFDDATGEWLAVAAEVRKRDV 71

Query: 63  LVNITERVENSIESPLDLHLGQVISRGDKMEFTIQKSVELGVTTITPLLSERCGV-KLDE 121
            + + E++    E+  DL L     +  ++++  +K+ ELGV  + P+L+ R  V KL+ 
Sbjct: 72  TLEVREQLRVR-EAVPDLWLCAAPIKKGRIDWVAEKACELGVARLAPVLTRRAVVDKLNL 130

Query: 122 KRFEKKIQQWQKIAISACEQCGRNTVPEIRPIMDLEA----WCAEPTEALKLNLHPRAKY 177
            R    +       I A EQCGR  +PE+   + L A    W AE   AL          
Sbjct: 131 DRLRTHM-------IEAAEQCGRTALPELVEPVKLAAMLKDWPAE--RALFFADETGGAP 181

Query: 178 SLNTLPTPVSKVRLLIGPEGGLSAEEIDMTRRYQFEETL-LGPRVLRTETAALTAIAALQ 236
           +L  +        +LIGPEGG  A+E D  R       + LGPR+LR ETAA  A++   
Sbjct: 182 ALEAMREHRGPAAILIGPEGGFDADERDAIRAMPLAVGITLGPRILRAETAAAAAVSLWM 241

Query: 237 VRFGD 241
              GD
Sbjct: 242 GAAGD 246