Pairwise Alignments

Query, 243 a.a., 16S rRNA (uracil(1498)-N(3))-methyltransferase from Vibrio cholerae E7946 ATCC 55056

Subject, 249 a.a., protein of unknown function DUF558 (RefSeq) from Dinoroseobacter shibae DFL-12

 Score = 92.8 bits (229), Expect = 6e-24
 Identities = 73/247 (29%), Positives = 118/247 (47%), Gaps = 20/247 (8%)

Query: 5   RIYHPEPIHQLGTVALSEDAAGHIGRVLRMQAGQEVLLFDGLGAEFPAVISEVGKKQVLV 64
           R+Y   P+ Q  TV LS   A ++  V+R   G+ V LF+G    + A + E GK+  ++
Sbjct: 11  RLYVEHPLGQGQTVPLSGAQAHYLFGVMRRGVGEVVTLFNGHAGAWAARVVEAGKRGGVL 70

Query: 65  NITERVENSIESPLDLHLGQVISRGDKMEFTIQKSVELGVTTITPLLSERCGVKLDEKRF 124
            +  +     + P DL L     +  + +F ++K+ E+G   I P+ +     +   +  
Sbjct: 71  EVETQTAPQRDPP-DLWLCFAPIKKARTDFIVEKAAEMGARRIVPVQTAFTNAERIRR-- 127

Query: 125 EKKIQQWQKIAISACEQCGRNTVPEIRPIMDLEA----WCAEPT-----EALKLNLHPRA 175
                + Q  A+ A EQCG   VPE+  ++ L+     W ++ +     EAL       A
Sbjct: 128 ----DRLQAHAVEAAEQCGGTFVPEVADLVGLDRLLSDWPSDRSLMFCDEALA---EEGA 180

Query: 176 KYSLNTLPTPVSKVRLLIGPEGGLSAEEIDMTRRY-QFEETLLGPRVLRTETAALTAIAA 234
             + +T   P     +LIGPEGG S  E    R   Q +   LGPR+LR +TAA+ A+  
Sbjct: 181 AAAADTPALPDGPWAILIGPEGGFSEPERARLRAMPQAQSVRLGPRILRADTAAVAALTL 240

Query: 235 LQVRFGD 241
            Q+R+GD
Sbjct: 241 WQIRYGD 247