Pairwise Alignments

Query, 368 a.a., twitching motility protein PilT from Vibrio cholerae E7946 ATCC 55056

Subject, 345 a.a., twitching motility protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  258 bits (658), Expect = 2e-73
 Identities = 143/343 (41%), Positives = 222/343 (64%), Gaps = 5/343 (1%)

Query: 1   MELNQYLDGMLTHKASDLYITVGAPILYRVDGELRAQG-EALSVADVTALLHAMMDDARQ 59
           ME+ + L   + HKASDL+++ G P + RVDGE+R     AL  A V +L++ +M+D ++
Sbjct: 1   MEITELLAFSVKHKASDLHLSAGVPPMIRVDGEVRKINLPALDHAGVHSLVYDIMNDKQR 60

Query: 60  AEFKQTREANFAV-VRDSGRFRVSAFFQRELPGAVIRRIETRIPTFEELKLPEVLQNLAI 118
            ++++  E +F+  V +  RFRV+AF Q     AV R I + I + E+L  P++ + +A 
Sbjct: 61  KDYEEHLEIDFSFEVPNLARFRVNAFNQSRGAAAVFRTIPSEILSLEQLGAPDIFKKIAS 120

Query: 119 AKRGLVLVVGATGSGKSTTMAAMTGYRNQHRTGHILTVEDPIEFVHEHKRCIVTQREVGL 178
             RGLVLV G TGSGKSTT+AAM  Y N++R  HILT+EDPIEFVH++K+C++ QREV  
Sbjct: 121 FPRGLVLVTGPTGSGKSTTLAAMIDYVNENRHDHILTIEDPIEFVHQNKQCLINQREVHR 180

Query: 179 DTESYEVALKNSLRQAPDMILIGEIRSRETMEYAMTFAETGHLCMATLHANNANQALERI 238
            T S+  AL+++LR+ PD+IL+GE+R  ET+  AMT AETGHL   TLH  +A + ++R+
Sbjct: 181 HTHSFNAALRSALREDPDVILVGEMRDLETIRLAMTAAETGHLVFGTLHTTSAAKTIDRV 240

Query: 239 LHLVPKEQREQFLLDLSLNLKGVIAQQLLRDKNGKGRHGVFEVLLNSPRIADLIRRGELH 298
           + + P  +++     LS +L+ VI+Q L++ K G GR    E+++ +P I +LIR  ++ 
Sbjct: 241 VDVFPAGEKDMVRTMLSESLQAVISQTLIK-KIGGGRVAAHEIMMGTPAIRNLIREDKVA 299

Query: 299 ELKATMARSQEVGMQTFDQALYQLVVDDKISEQDALHSADSAN 341
           ++ + +      GMQT +Q L  LV    I+ +DA+  A S+N
Sbjct: 300 QMYSAIQTGMAHGMQTLEQCLQNLVNRGLITREDAM--AKSSN 340