Pairwise Alignments

Query, 368 a.a., twitching motility protein PilT from Vibrio cholerae E7946 ATCC 55056

Subject, 370 a.a., twitching motility protein PilU (RefSeq) from Shewanella amazonensis SB2B

 Score =  447 bits (1149), Expect = e-130
 Identities = 219/370 (59%), Positives = 292/370 (78%), Gaps = 2/370 (0%)

Query: 1   MELNQYLDGMLTHKASDLYITVGAPILYRVDGELRAQGE-ALSVADVTALLHAMMDDARQ 59
           M++  +L  M+  KASDL+IT G P   ++DGELR   E A S A     + ++M DA++
Sbjct: 1   MDVRPFLKVMVERKASDLFITAGFPPSAKIDGELRPLAENAFSPAQSLDFVESLMSDAQK 60

Query: 60  AEFKQTREANFA-VVRDSGRFRVSAFFQRELPGAVIRRIETRIPTFEELKLPEVLQNLAI 118
            EF ++RE NFA   +D GRFRVSAF+QRE PG V+RRIET+IP  E+LKLP VL++L +
Sbjct: 61  KEFHESRECNFAFAAKDLGRFRVSAFWQRESPGCVMRRIETKIPEMEDLKLPPVLKDLVM 120

Query: 119 AKRGLVLVVGATGSGKSTTMAAMTGYRNQHRTGHILTVEDPIEFVHEHKRCIVTQREVGL 178
           +KRGL+++VG TG+GKST++AAM GYRN H  GHILT+EDP+EFVH+H++ I+TQREVG+
Sbjct: 121 SKRGLIIMVGGTGTGKSTSLAAMVGYRNGHERGHILTIEDPVEFVHDHRKSIITQREVGI 180

Query: 179 DTESYEVALKNSLRQAPDMILIGEIRSRETMEYAMTFAETGHLCMATLHANNANQALERI 238
           DTES++ ALK+SLRQAPD+ILIGEIRS+ETME+A++FAETGHLCMATLHANNANQAL+RI
Sbjct: 181 DTESFDAALKSSLRQAPDVILIGEIRSQETMEFALSFAETGHLCMATLHANNANQALDRI 240

Query: 239 LHLVPKEQREQFLLDLSLNLKGVIAQQLLRDKNGKGRHGVFEVLLNSPRIADLIRRGELH 298
           +HLVP+ + +Q L DLSLNL+G++AQQL+   +G GR    E+L+N+PR++ +I++ ELH
Sbjct: 241 MHLVPESKHQQLLFDLSLNLRGIVAQQLVPKADGTGRRAAIEILINTPRVSSIIQKNELH 300

Query: 299 ELKATMARSQEVGMQTFDQALYQLVVDDKISEQDALHSADSANDLRLMLKTKRGDDYGSG 358
            LK TMA+S E GMQTFDQAL++L  + +I+  DALH ADS NDLRLM+K    +  GSG
Sbjct: 301 LLKDTMAKSNEQGMQTFDQALFKLYQEGEITYADALHHADSPNDLRLMIKLAGSESTGSG 360

Query: 359 SLQNVKIDME 368
            L+ V +DM+
Sbjct: 361 FLEGVTLDMD 370