Pairwise Alignments

Query, 368 a.a., twitching motility protein PilT from Vibrio cholerae E7946 ATCC 55056

Subject, 345 a.a., twitching motility protein (RefSeq) from Shewanella loihica PV-4

 Score =  253 bits (646), Expect = 5e-72
 Identities = 139/343 (40%), Positives = 217/343 (63%), Gaps = 3/343 (0%)

Query: 1   MELNQYLDGMLTHKASDLYITVGAPILYRVDGELRAQG-EALSVADVTALLHAMMDDARQ 59
           ME+ + L   + H ASDL+++ G   + RVDGE+R     AL    V +L++ +M+D ++
Sbjct: 1   MEITELLAFSVKHNASDLHLSAGVSPMIRVDGEVRKINLPALDHQGVHSLVYDIMNDKQR 60

Query: 60  AEFKQTREANFAV-VRDSGRFRVSAFFQRELPGAVIRRIETRIPTFEELKLPEVLQNLAI 118
            ++++  E +F+  V +  RFRV+AF Q     AV R I + I + E+L  PE+ + +A 
Sbjct: 61  KDYEEHLEIDFSFEVPNLARFRVNAFNQSRGAAAVFRTIPSEILSLEKLGAPEIFKKIAS 120

Query: 119 AKRGLVLVVGATGSGKSTTMAAMTGYRNQHRTGHILTVEDPIEFVHEHKRCIVTQREVGL 178
             RGLVLV G TGSGKSTT+A M  Y N++R  HILT+EDPIEFVH++K+C++ QREV  
Sbjct: 121 FPRGLVLVTGPTGSGKSTTLAGMIDYVNENRHDHILTIEDPIEFVHQNKQCLINQREVHR 180

Query: 179 DTESYEVALKNSLRQAPDMILIGEIRSRETMEYAMTFAETGHLCMATLHANNANQALERI 238
            T S+  AL+++LR+ PD+IL+GE+R  ET+  AMT AETGHL   TLH  +A + ++R+
Sbjct: 181 HTHSFNAALRSALREDPDVILVGEMRDLETIRLAMTAAETGHLVFGTLHTTSAAKTIDRV 240

Query: 239 LHLVPKEQREQFLLDLSLNLKGVIAQQLLRDKNGKGRHGVFEVLLNSPRIADLIRRGELH 298
           + + P+ ++      LS +L+ VI+Q L++ K G GR    E+++ +P I +LIR  ++ 
Sbjct: 241 VDVFPEGEKSMVRTMLSESLQAVISQTLIK-KVGGGRVAAHEIMMGTPAIRNLIREDKVA 299

Query: 299 ELKATMARSQEVGMQTFDQALYQLVVDDKISEQDALHSADSAN 341
           ++ + +      GMQT DQ L  LV    I+ +DA+  + + N
Sbjct: 300 QMYSAIQTGMAHGMQTLDQCLQNLVNRGLITREDAMAKSSNKN 342