Pairwise Alignments

Query, 368 a.a., twitching motility protein PilT from Vibrio cholerae E7946 ATCC 55056

Subject, 370 a.a., twitching motility protein PilU (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  441 bits (1133), Expect = e-128
 Identities = 217/370 (58%), Positives = 291/370 (78%), Gaps = 2/370 (0%)

Query: 1   MELNQYLDGMLTHKASDLYITVGAPILYRVDGELRAQGEAL-SVADVTALLHAMMDDARQ 59
           M++  +L  M+  KASDL+IT G P   ++DGELR   E++ + A     + ++M +A++
Sbjct: 1   MDVRPFLKVMVERKASDLFITAGFPPSAKIDGELRPLAESIFTPAQSLDFVESVMTEAQK 60

Query: 60  AEFKQTREANFA-VVRDSGRFRVSAFFQRELPGAVIRRIETRIPTFEELKLPEVLQNLAI 118
            EF  TRE NFA  V++ GRFRVSAF+QRE PG V+RRIET+IP  ++LKLP +L++L +
Sbjct: 61  KEFHTTRECNFAFAVKELGRFRVSAFWQRESPGCVMRRIETKIPEVDDLKLPPILKDLVM 120

Query: 119 AKRGLVLVVGATGSGKSTTMAAMTGYRNQHRTGHILTVEDPIEFVHEHKRCIVTQREVGL 178
           +KRGL+++VG TG+GKST++AA+ GYRN H  GHILT+EDP+EFVH+H++ I+TQREVG+
Sbjct: 121 SKRGLIIMVGGTGTGKSTSLAALVGYRNSHARGHILTIEDPVEFVHDHRKSIITQREVGI 180

Query: 179 DTESYEVALKNSLRQAPDMILIGEIRSRETMEYAMTFAETGHLCMATLHANNANQALERI 238
           DTES++ ALK+SLRQAPD+ILIGEIR++ETME+A++FAETGHLCMATLHANNANQAL+RI
Sbjct: 181 DTESFDAALKSSLRQAPDVILIGEIRTQETMEFALSFAETGHLCMATLHANNANQALDRI 240

Query: 239 LHLVPKEQREQFLLDLSLNLKGVIAQQLLRDKNGKGRHGVFEVLLNSPRIADLIRRGELH 298
           +HLVP+ + +Q L DLSLNL+G++AQQL+   +G GR    EVL+N+PR+A LI + ELH
Sbjct: 241 MHLVPESKHQQLLFDLSLNLRGIVAQQLVPKVDGTGRRAAIEVLINTPRVASLIAKNELH 300

Query: 299 ELKATMARSQEVGMQTFDQALYQLVVDDKISEQDALHSADSANDLRLMLKTKRGDDYGSG 358
            LK TMA+S E GMQTFDQAL QL VD +IS  DALH ADS NDLRLM+K +  +   S 
Sbjct: 301 LLKETMAKSNEQGMQTFDQALLQLYVDGEISYADALHHADSPNDLRLMIKLQNKEPPSSS 360

Query: 359 SLQNVKIDME 368
            ++ V +DM+
Sbjct: 361 FMEGVTLDMD 370