Pairwise Alignments

Query, 345 a.a., type IV pili twitching motility protein PilT from Vibrio cholerae E7946 ATCC 55056

Subject, 370 a.a., twitching motility protein PilU (RefSeq) from Shewanella amazonensis SB2B

 Score =  269 bits (688), Expect = 7e-77
 Identities = 141/330 (42%), Positives = 208/330 (63%), Gaps = 1/330 (0%)

Query: 1   MDIAELLEFSVKHNASDLHLSAGVPPMVRIDGEVRKLGVPAFTHSDVHRLIFEIMNDAQR 60
           MD+   L+  V+  ASDL ++AG PP  +IDGE+R L   AF+ +     +  +M+DAQ+
Sbjct: 1   MDVRPFLKVMVERKASDLFITAGFPPSAKIDGELRPLAENAFSPAQSLDFVESLMSDAQK 60

Query: 61  SEYEEKLEVDFSFELPNVGRFRVNAFHQARGCSAVFRTIPTVIPTLEQLDAPEIFSKIAN 120
            E+ E  E +F+F   ++GRFRV+AF Q      V R I T IP +E L  P +   +  
Sbjct: 61  KEFHESRECNFAFAAKDLGRFRVSAFWQRESPGCVMRRIETKIPEMEDLKLPPVLKDLVM 120

Query: 121 YEKGLVLVTGPTGSGKSTTLAAMVNYVNAHHNKHILTIEDPIEFVHSNNKCLINQREVHR 180
            ++GL+++ G TG+GKST+LAAMV Y N H   HILTIEDP+EFVH + K +I QREV  
Sbjct: 121 SKRGLIIMVGGTGTGKSTSLAAMVGYRNGHERGHILTIEDPVEFVHDHRKSIITQREVGI 180

Query: 181 DTHSFKNALRSALREDPDVILVGELRDQETISLALTAAETGHLVFGTLHTSSAAKTIDRI 240
           DT SF  AL+S+LR+ PDVIL+GE+R QET+  AL+ AETGHL   TLH ++A + +DRI
Sbjct: 181 DTESFDAALKSSLRQAPDVILIGEIRSQETMEFALSFAETGHLCMATLHANNANQALDRI 240

Query: 241 IDVFPGSDKDMVRSMLSESLRAVIAQKLLKRVGG-GRVACHEIMLATPAIRNLIREDKVA 299
           + + P S    +   LS +LR ++AQ+L+ +  G GR A  EI++ TP + ++I+++++ 
Sbjct: 241 MHLVPESKHQQLLFDLSLNLRGIVAQQLVPKADGTGRRAAIEILINTPRVSSIIQKNELH 300

Query: 300 QMYSIIQTGAAHGMQTMEQNAKQLIARGVV 329
            +   +      GMQT +Q   +L   G +
Sbjct: 301 LLKDTMAKSNEQGMQTFDQALFKLYQEGEI 330