Pairwise Alignments

Query, 345 a.a., type IV pili twitching motility protein PilT from Vibrio cholerae E7946 ATCC 55056

Subject, 370 a.a., twitching motility protein (RefSeq) from Shewanella sp. ANA-3

 Score =  270 bits (689), Expect = 6e-77
 Identities = 143/330 (43%), Positives = 208/330 (63%), Gaps = 1/330 (0%)

Query: 1   MDIAELLEFSVKHNASDLHLSAGVPPMVRIDGEVRKLGVPAFTHSDVHRLIFEIMNDAQR 60
           MD+   L+  V+  ASDL ++AG PP  +IDGE+R L   AFT +     +  +M +AQ+
Sbjct: 1   MDVRPFLKVMVERKASDLFITAGFPPSAKIDGELRPLAESAFTPAQSLDFVESVMTEAQK 60

Query: 61  SEYEEKLEVDFSFELPNVGRFRVNAFHQARGCSAVFRTIPTVIPTLEQLDAPEIFSKIAN 120
            E+    E +F+F + ++GRFRV+AF Q      V R I T IP +E L  P I   +  
Sbjct: 61  KEFHSTRECNFAFAVKDLGRFRVSAFWQRESPGCVMRRIETKIPEVEDLKLPPILKDLVM 120

Query: 121 YEKGLVLVTGPTGSGKSTTLAAMVNYVNAHHNKHILTIEDPIEFVHSNNKCLINQREVHR 180
            ++GL+++ G TG+GKST+LAA+V Y NAH   HILTIEDP+EFVH + K +I QREV  
Sbjct: 121 SKRGLIIMVGGTGTGKSTSLAALVGYRNAHARGHILTIEDPVEFVHDHRKSIITQREVGI 180

Query: 181 DTHSFKNALRSALREDPDVILVGELRDQETISLALTAAETGHLVFGTLHTSSAAKTIDRI 240
           DT SF  AL+S+LR+ PDVIL+GE+R QET+  AL+ AETGHL   TLH ++A + +DRI
Sbjct: 181 DTESFDAALKSSLRQAPDVILIGEIRTQETMEFALSFAETGHLCMATLHANNANQALDRI 240

Query: 241 IDVFPGSDKDMVRSMLSESLRAVIAQKLLKRVGG-GRVACHEIMLATPAIRNLIREDKVA 299
           + + P S    +   LS +LR ++AQ+L+ +V G GR A  E+++ TP + +LI ++++ 
Sbjct: 241 MHLVPESKHQQLLFDLSLNLRGIVAQQLVPKVDGTGRRAAIEVLINTPRVASLIAKNELH 300

Query: 300 QMYSIIQTGAAHGMQTMEQNAKQLIARGVV 329
            +   +      GMQT +Q   QL   G +
Sbjct: 301 LLKETMAKSNEQGMQTFDQALLQLYIDGEI 330