Pairwise Alignments

Query, 185 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 196 a.a., Integral membrane protein YggT, involved in response to extracytoplasmic stress (osmotic shock) from Pseudomonas fluorescens FW300-N2E2

 Score =  136 bits (342), Expect = 3e-37
 Identities = 70/170 (41%), Positives = 111/170 (65%), Gaps = 2/170 (1%)

Query: 6   FLINTLFDLYIMVVILRIWLQAARADFYNPFSQFIVKATQPVVGPLRRVIPSIGSIDLAT 65
           +++ TL  LY+++V+LR  LQ  RA+FYNP  QFIVKATQP++ PLRR+IPS+  +D+++
Sbjct: 10  YVLQTLGSLYLLIVLLRFVLQLVRANFYNPLCQFIVKATQPLLKPLRRIIPSVFGLDMSS 69

Query: 66  IVFAYVLCVLKFMALVLIASSGSVSFSADFLFLGLLSLIKAAGGLLFWVLLIRAILSWVS 125
           +V A +L  L  MAL L+ + G+       L   L+ +      + F+ ++I  ILSWV+
Sbjct: 70  LVLA-ILVQLALMALTLLLTYGTTGNPLQLLIWSLIGVTALFLKIFFFAMIISVILSWVA 128

Query: 126 QG-RSPIEYVFHQLTEPMLAPIRRIIPVMGGFDLSVLVLFIVLQFANFLM 174
            G  +P   + +Q+ EP LAP RRI+P +GG D+S ++ F+VL+  + L+
Sbjct: 129 PGSHNPGAELVNQICEPALAPFRRIVPNLGGLDISPILAFMVLKLIDMLV 178



 Score = 42.0 bits (97), Expect = 7e-09
 Identities = 18/85 (21%), Positives = 47/85 (55%), Gaps = 3/85 (3%)

Query: 14  LYIMVVILRIWLQAARADFYNPFSQFIVKATQPVVGPLRRVIPSIGSIDLATIVFAYVLC 73
           ++   +I+ + L       +NP ++ + +  +P + P RR++P++G +D++ I+      
Sbjct: 113 IFFFAMIISVILSWVAPGSHNPGAELVNQICEPALAPFRRIVPNLGGLDISPIL---AFM 169

Query: 74  VLKFMALVLIASSGSVSFSADFLFL 98
           VLK + +++I +  +++   + L L
Sbjct: 170 VLKLIDMLVINNLAAITMMPEILRL 194