Pairwise Alignments

Query, 185 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 196 a.a., Predicted integral membrane protein from Pseudomonas stutzeri RCH2

 Score =  140 bits (352), Expect = 2e-38
 Identities = 70/173 (40%), Positives = 113/173 (65%), Gaps = 2/173 (1%)

Query: 3   SLSFLINTLFDLYIMVVILRIWLQAARADFYNPFSQFIVKATQPVVGPLRRVIPSIGSID 62
           +L  +I TL  LY+++V+LR  LQ  RADFYNP SQFIVKAT P++ P+RR+IPS+G++D
Sbjct: 7   ALILVIQTLGSLYLLIVLLRFILQLVRADFYNPLSQFIVKATHPLLRPMRRIIPSMGTLD 66

Query: 63  LATIVFAYVLCVLKFMALVLIASSGSVSFSADFLFLGLLSLIKAAGGLLFWVLLIRAILS 122
           L++++ A ++ ++  M L+L+ + G+       L   L+ +      + FW L+I  ILS
Sbjct: 67  LSSLILALIVQMV-LMTLILLIAYGTTGNPLLLLVWALIGITGLFLNIFFWALIISVILS 125

Query: 123 WVSQG-RSPIEYVFHQLTEPMLAPIRRIIPVMGGFDLSVLVLFIVLQFANFLM 174
           WV+ G  +P   +  QL EP+LAP RR++P +GG D+S +  F+ ++  + L+
Sbjct: 126 WVAPGSHNPGAQLVSQLCEPVLAPFRRLLPNLGGLDISPIFAFLTIKLLDMLV 178



 Score = 41.2 bits (95), Expect = 1e-08
 Identities = 19/69 (27%), Positives = 41/69 (59%), Gaps = 1/69 (1%)

Query: 13  DLYIMVVILRIWLQAARADFYNPFSQFIVKATQPVVGPLRRVIPSIGSIDLATIVFAYVL 72
           +++   +I+ + L       +NP +Q + +  +PV+ P RR++P++G +D++ I FA++ 
Sbjct: 112 NIFFWALIISVILSWVAPGSHNPGAQLVSQLCEPVLAPFRRLLPNLGGLDISPI-FAFLT 170

Query: 73  CVLKFMALV 81
             L  M +V
Sbjct: 171 IKLLDMLVV 179