Pairwise Alignments

Query, 185 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 187 a.a., membrane protein from Burkholderia phytofirmans PsJN

 Score =  127 bits (320), Expect = 9e-35
 Identities = 61/163 (37%), Positives = 105/163 (64%), Gaps = 1/163 (0%)

Query: 6   FLINTLFDLYIMVVILRIWLQAARADFYNPFSQFIVKATQPVVGPLRRVIPSIGSIDLAT 65
           FL+NT+F L+   ++LR WLQ  R   YNP +  +++ T  +V PLR ++PS   ID A+
Sbjct: 8   FLLNTVFTLFGAALLLRAWLQVVRMPPYNPVTNAVLQVTNWIVLPLRHILPSTRKIDWAS 67

Query: 66  IVFAYVLCVLKFMALVLIASSGSVSFSADFLFLGLLSLIKAAGGLLFWVLLIRAILSWVS 125
           +V A +  ++  + +V++  +  +S     L + +L+LIK A  L+ W+ ++ A+LSW++
Sbjct: 68  LVAALLAAIVYVVLMVVLTGADPLSLLPTLLIVAVLTLIKWALNLIIWLTILMALLSWLN 127

Query: 126 QGRSPIEYVFHQLTEPMLAPIRRIIPVMGGFDLSVLVLFIVLQ 168
             RSP   + +QLT P L P+RR++P +GG DLS ++LF+++Q
Sbjct: 128 P-RSPAMPILYQLTAPFLNPLRRVVPQLGGIDLSPILLFVIVQ 169



 Score = 39.3 bits (90), Expect = 4e-08
 Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 6/72 (8%)

Query: 4   LSFLINTLFDLYIMVVILRIWLQAARADFYNPFSQFIVKATQPVVGPLRRVIPSIGSIDL 63
           + + +N +  L I++ +L  WL        +P    + + T P + PLRRV+P +G IDL
Sbjct: 106 IKWALNLIIWLTILMALLS-WLNPR-----SPAMPILYQLTAPFLNPLRRVVPQLGGIDL 159

Query: 64  ATIVFAYVLCVL 75
           + I+   ++ VL
Sbjct: 160 SPILLFVIVQVL 171