Pairwise Alignments

Query, 391 a.a., YggW family oxidoreductase from Vibrio cholerae E7946 ATCC 55056

Subject, 377 a.a., Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB from Pseudomonas fluorescens FW300-N2E2

 Score =  433 bits (1114), Expect = e-126
 Identities = 212/383 (55%), Positives = 269/383 (70%), Gaps = 8/383 (2%)

Query: 5   PSLSLYIHIPWCVQKCPYCDFNSHAQKGEIPEQEYLDALLQDLDRDIERYQLKGDPRLLH 64
           P L+LY+HIPWCV+KCPYCDFNSH    ++PE+EY+DALL DLD+D+  +   G P  L 
Sbjct: 3   PPLALYVHIPWCVRKCPYCDFNSHTASPQLPEEEYVDALLADLDQDL--HAAHGRP--LS 58

Query: 65  SIFIGGGTPSLISAEGIARLLQGVAERIAFKPEIEITMEANPGTIEAQRFAGYRTAGVTR 124
           SIF GGGTPSL SA+ + RLL+GV  RI F  +IEIT+EANPGT E ++F  YR  G+ R
Sbjct: 59  SIFFGGGTPSLFSAQALGRLLKGVEARIPFAQDIEITLEANPGTFEQEKFVAYRALGINR 118

Query: 125 ISIGVQSFEPEKLARLGRIHGQQEAVRAAQLAHQIGLNSFNLDLMHGLPDQTPEQALADL 184
           +SIG+QSF+  KL  LGRIH   EAVRAA +A Q G ++FNLDLMHGLPDQ+ + AL DL
Sbjct: 119 LSIGIQSFQQAKLEALGRIHNGDEAVRAAGMARQAGFDNFNLDLMHGLPDQSLDDALGDL 178

Query: 185 DQAIALNPPHLSWYQLTIEPNTLFYSKPPKLPDEDALWDIFELGHQKLSDAGYVQYEISG 244
            QAIAL P HLSWYQLT+EPNT+F+++PP LP++D LWDI E G   L++ GY QYE+S 
Sbjct: 179 SQAIALKPTHLSWYQLTLEPNTVFWNQPPTLPEDDTLWDIQEAGQALLAEHGYAQYEVSA 238

Query: 245 YSKPGYQCQHNLNYWRFGDYLGIGCGAHGKLSFADGRIVRTTKTKHPRGYLAALNNLAKA 304
           Y++PG   +HNLNYW FGD++GIG GAHGKLS  DGRIVRT KT+ P+ YL    N AK 
Sbjct: 239 YAQPGRAARHNLNYWSFGDFIGIGAGAHGKLSHPDGRIVRTWKTRLPKDYL----NPAKR 294

Query: 305 YLDSEQLVADQDKPFEFFMNRFRLIEPCPKADFTATTGLTIDVIRPTLDWALSEGYLSED 364
           +L  E+ + +++ PFEF MN  RL E      F   TGL +  +      A   G L  +
Sbjct: 295 FLAGEKTLTNEELPFEFLMNALRLTEGVDAQLFAQRTGLPLQSLAEGRREAEQSGLLQVE 354

Query: 365 DQHWQITEKGKLFLNDLLEAFMA 387
                 TE+G+LFLNDLL+ F++
Sbjct: 355 PTRLAATERGQLFLNDLLQTFLS 377