Pairwise Alignments

Query, 541 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 647 a.a., Methyl-accepting chemotaxis protein from Pseudomonas fluorescens FW300-N2E2

 Score =  186 bits (473), Expect = 2e-51
 Identities = 140/470 (29%), Positives = 229/470 (48%), Gaps = 28/470 (5%)

Query: 74  TRLMRNNLYKDNEYVYVADENMTFVATPLDPQLHDTSFHDFKDGKGNSVGRLIQDVLRHQ 133
           T L++N    ++ Y+ + + N   +  P D +      H+FK      +G    ++ +  
Sbjct: 198 TELVKNIKLGESGYLMLVEANGNVLVDPADAK------HNFKPLA--DLGPNYAELAKSS 249

Query: 134 SGKLVEYTWTQKQADGSIEEKLSIARKTPHWGWV--VGTGIGFNEVNARFWSTAQWQLSL 191
            G       TQ + DG       ++ K   W ++  +       E ++  W  A     L
Sbjct: 250 DGV------TQIEIDGVPYMANVVSSKGLGWRFIGLIKRDEVMAEASSLTWLIAAIAAVL 303

Query: 192 CVVIAVAILSLLLVAIRKILLIIGGEPNEVRSAVQAVAQGR--IRREFVIKAPKES--IY 247
            VV A+   S   V +R I  +  G        +Q +A+G   + R+  ++   E+  + 
Sbjct: 304 AVVFALVGASFASVIVRPIRGVANG--------LQEIAEGEGDLTRKLTVQGKDETATLA 355

Query: 248 GAVQQMSSSLADLVAKLEQSMVALRSELAGAGTRAKSIAELTDSQQQSTAMIATAMTEMA 307
           G   Q    +A L+ ++  +   L++  A     A+++ +    Q+Q+  +++TA  EM 
Sbjct: 356 GWFNQFLGMIAQLMQRIGSASSDLQTAAADTSHVAQNMNDAAGRQRQAVELVSTAFNEMV 415

Query: 308 SSANQVADSARDTAFNTDQADQQSQHTQKLIHNTVSNIQGLATQLQTASTAVADLDLDVK 367
           ++AN+VA S    A + D+  +     Q  I     ++  L+  LQ ++  +  L+ D K
Sbjct: 416 ATANEVARSCSQAASSADEGYRDVHDGQHHIGEATGSVMKLSDDLQKSTQTMQALEQDSK 475

Query: 368 NIAKVLDVIGDIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAGRTQTSTKEIQQ 427
           NI  +LD I  IAEQTNLLALNAAIEAARAG+QGRGFAVVADEVR LA RT  ST EI  
Sbjct: 476 NINTILDTIRSIAEQTNLLALNAAIEAARAGDQGRGFAVVADEVRALARRTADSTGEIDS 535

Query: 428 MIHNLQEGSRNAIQTIQICGQTSQSSVQESENAASALALIVSALESVSSMSHQIATAAAE 487
           ++ NL   ++   Q +Q   Q SQ+SV+  + A  +   I ++++S+   + QIATAA E
Sbjct: 536 LLGNLARRTQEVTQQMQSSLQVSQTSVERIQQARDSFDKIRNSVDSIRDQNTQIATAAEE 595

Query: 488 QTQVSDDIARRINMIEESGSKLSRVVMESHNSTQTLTKLARELEQWAAHF 537
           Q QV++DI R I  I      +      +   +  LT ++ +L+     F
Sbjct: 596 QHQVAEDINRHIAQIHADAQLVEEFAHSAQTGSGRLTDISGQLKGLVGRF 645