Pairwise Alignments

Query, 541 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 544 a.a., Methyl-accepting chemotaxis protein from Pseudomonas stutzeri RCH2

 Score =  219 bits (559), Expect = 2e-61
 Identities = 152/542 (28%), Positives = 259/542 (47%), Gaps = 11/542 (2%)

Query: 3   LKTQAYLLSAIILAALLALTATGLWTLRVASNLDNKARVTELFNSAYSILTEVEKLAQEG 62
           +  + +L+  + +  L  L    +  +R       +     +  +A  +     KL   G
Sbjct: 9   ISKRLWLIPVVAVVMLFILGLLMIQQVRSDLYRGKQESTRHVVEAASGVFEHYRKLELSG 68

Query: 63  KMSEPEAKALATRLMRNNLYKDNEYVYVADENMTFVATPLDPQLHDTSFHDFKDGKGNSV 122
            M+  EA+  A   +R   Y   +Y ++ D   T +  P+ P+L        KD +G  +
Sbjct: 69  AMTTAEAQKAAIEQIRLLRYDGQDYYWINDLGPTMIMHPMQPKLDGQDLSKIKDPEGKEL 128

Query: 123 GRLIQDVLRHQSGKLVEYTWTQKQADGSIEEKLSIARKTPHWGWVVGTGIGFNEVNARFW 182
              +  + +     LV+Y W +   +  +  K+S  +    WGW++G+GI  ++V   FW
Sbjct: 129 FNEMVRIAQRDGAGLVDYMWAKPGEENPVP-KISYVQLFKPWGWIIGSGIYVDDVEQEFW 187

Query: 183 STAQWQLSLCVVIAVAILSLLL-VAIRKILLIIGGEPNEVRSAVQAVAQGR--IRREFVI 239
           +    + SL  ++  AI+++L+ + IR I+  +        +A+  +A G   + R   +
Sbjct: 188 NYLT-RFSLIGLLISAIMAVLVAILIRSIVRPL----RHTMAAMANIASGEADLTRTLDV 242

Query: 240 KAPKE--SIYGAVQQMSSSLADLVAKLEQSMVALRSELAGAGTRAKSIAELTDSQQQSTA 297
               E  ++     + +  L  +V +L ++  AL          +    E +  Q     
Sbjct: 243 SGNDELTTLGRDFNRFTQKLRTVVGQLFETAGALDQSSRSLSQLSGQAHEQSQQQMLQME 302

Query: 298 MIATAMTEMASSANQVADSARDTAFNTDQADQQSQHTQKLIHNTVSNIQGLATQLQTAST 357
            +ATA+ E+  +  +VA +A   +     A+ Q+   Q+ I  ++  I  L+  +  A  
Sbjct: 303 QVATAINEVTYAVQEVAKNAEHASSEVGSAENQAGQGQRNIETSLQQIDELSATIGQAVD 362

Query: 358 AVADLDLDVKNIAKVLDVIGDIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAGR 417
            +  L  +   I  VL+VIG IAEQTNLLALNAAIEAARAGEQGRGFAVVADEVR LA R
Sbjct: 363 VIQSLADETTKIGSVLEVIGSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRLLAQR 422

Query: 418 TQTSTKEIQQMIHNLQEGSRNAIQTIQICGQTSQSSVQESENAASALALIVSALESVSSM 477
           TQ ST EI  MI  LQ+ S  A+  I    + SQ +V+++  A  +L  I  AL ++S +
Sbjct: 423 TQQSTAEIHGMIERLQKNSGAAVNVIMESNRASQLTVEQASQAGESLGEIAQALRNLSGL 482

Query: 478 SHQIATAAAEQTQVSDDIARRINMIEESGSKLSRVVMESHNSTQTLTKLARELEQWAAHF 537
           +  IA+A  +Q+ V +DI + +        + +    +S  + + L +LA +L +  + F
Sbjct: 483 NASIASATLQQSHVVEDINQNVTQAAGLAQESTLAAEQSSEAGKQLGELAGQLNRLLSQF 542

Query: 538 EV 539
            V
Sbjct: 543 RV 544