Pairwise Alignments

Query, 541 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 526 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score =  175 bits (444), Expect = 3e-48
 Identities = 117/302 (38%), Positives = 176/302 (58%), Gaps = 20/302 (6%)

Query: 259 DLVAKLEQSMVALRSELAGA--GTRAKSIAELTDS-----------------QQQSTAMI 299
           D + ++E +M  L +E AGA  G  A S  +L+D                  QQQ T +I
Sbjct: 224 DEIGQIEFAMKMLETE-AGAMVGRIADSSRQLSDHARDLLGAMHGSTQSAARQQQETDLI 282

Query: 300 ATAMTEMASSANQVADSARDTAFNTDQADQQSQHTQKLIHNTVSNIQGLATQLQTASTAV 359
           ATA+ +M++S  +VA +A+ TA    +AD ++   ++++  T S+I  LA  +Q A+  +
Sbjct: 283 ATAIQQMSASVQEVALNAQRTAEVAARADSEAAKGREVVGRTGSSITRLAADIQQAAEVI 342

Query: 360 ADLDLDVKNIAKVLDVIGDIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAGRTQ 419
             L+   + I++VLDVI  IAEQTNLLALNAAIEAARAGEQGRGFAVVADEVR LA RT 
Sbjct: 343 HQLENHSQEISRVLDVIHGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRQLASRTS 402

Query: 420 TSTKEIQQMIHNLQEGSRNAIQTIQICGQTSQSSVQESENAASALALIVSALESVSSMSH 479
            +T +IQ+MI +LQ G+R A+  +Q   + ++ SV  ++ A  +L+ I S +  +S+MS 
Sbjct: 403 LATTDIQRMIGSLQTGAREAVDVMQRSREQAEHSVSHADQAEHSLSGINSRVNEISAMSS 462

Query: 480 QIATAAAEQTQVSDDIARRINMIEESGSKLSRVVMESHNSTQTLTKLARELEQWAAHFEV 539
           QIA A  +Q+ V ++I++ I  I  S  +     + S  +   +  LA  + +    F  
Sbjct: 463 QIAAAVDQQSSVGEEISQSIVSIRGSSDEHVASGLHSQRNATGVALLADGMLELVQQFWT 522

Query: 540 TR 541
            R
Sbjct: 523 RR 524