Pairwise Alignments

Query, 541 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 528 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score =  182 bits (463), Expect = 2e-50
 Identities = 121/311 (38%), Positives = 174/311 (55%), Gaps = 10/311 (3%)

Query: 238 VIKAPKESIYG----AVQQMSSSLADLVAKLEQSMVALRS---ELAGAGTRAKSIAELTD 290
           +I A +   YG    A++ + +    +V ++  +   L     EL GA     S  +   
Sbjct: 219 LIYAGRRDEYGQIAFAMKMLETEAGAMVGRIGDASRQLSQHAHELLGA---MDSSTQSAS 275

Query: 291 SQQQSTAMIATAMTEMASSANQVADSARDTAFNTDQADQQSQHTQKLIHNTVSNIQGLAT 350
            QQ  T  +ATA+ +MA+S  +VA++A+ TA    +AD ++    ++++ T + I  LA 
Sbjct: 276 RQQSETDQVATAINQMAASVQEVANNAQRTAEAASRADSETATGTEVVNRTGAAIGQLAQ 335

Query: 351 QLQTASTAVADLDLDVKNIAKVLDVIGDIAEQTNLLALNAAIEAARAGEQGRGFAVVADE 410
            +Q A   + +L+    +I KVLDVI  IAEQTNLLALNAAIEAARAGEQGRGFAVVADE
Sbjct: 336 DIQQAGDVIHELEAHSNDITKVLDVIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADE 395

Query: 411 VRNLAGRTQTSTKEIQQMIHNLQEGSRNAIQTIQICGQTSQSSVQESENAASALALIVSA 470
           VRNLA RTQ ST+EI  MI  LQ G+R A++ +Q   + +  SV+ +  AA +L  I S 
Sbjct: 396 VRNLASRTQQSTQEINGMIGALQGGARQAVEVMQRSREQAMQSVEHAAQAARSLHGINSR 455

Query: 471 LESVSSMSHQIATAAAEQTQVSDDIARRINMIEESGSKLSRVVMESHNSTQTLTKLAREL 530
           +  +S MS QIA A  +Q+ VS++I + I  I           + S  S   + +LA  +
Sbjct: 456 VTEISEMSQQIAAAVEQQSAVSENINQNIVSIRGGSDHHVANGLRSRQSASGVAELANSM 515

Query: 531 EQWAAHFEVTR 541
           E     F   R
Sbjct: 516 EVLVQQFWTRR 526