Pairwise Alignments

Query, 541 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 676 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  187 bits (475), Expect = 1e-51
 Identities = 119/368 (32%), Positives = 196/368 (53%), Gaps = 5/368 (1%)

Query: 175 NEVNARFWSTAQWQ---LSLCVVIAVAILSLLLVAIRKILLIIGGEPNEVRSAVQAVAQG 231
           NE+N R+ +    +   +++CV++ + +L       R + L I       R   +     
Sbjct: 309 NELNTRYDALVLQREVVIAMCVIMGLLLLYAFCSIYRALRLTIDSLLGVTRRLGEGDLSA 368

Query: 232 RIRREFVIKAPKESIYGAVQQMSSSLADLVAKLEQSMVALRSELAGAGTRAKSIAELTDS 291
           R+    V K     I   +  M+ + A  ++ ++++   L    +  G       +  ++
Sbjct: 369 RVA--VVSKDEVADIANGLNLMADAFASSISHMDRTSYELTDVASRLGASIGLAKQSMNA 426

Query: 292 QQQSTAMIATAMTEMASSANQVADSARDTAFNTDQADQQSQHTQKLIHNTVSNIQGLATQ 351
           QQ  T  +ATA+ EM +S   VA +    A   D+A+  S++  +++H   S IQ LA +
Sbjct: 427 QQAETEQVATAINEMTASVADVAQNTEGAALAADEANTASRNGLRIMHQAHSTIQALAEE 486

Query: 352 LQTASTAVADLDLDVKNIAKVLDVIGDIAEQTNLLALNAAIEAARAGEQGRGFAVVADEV 411
           ++ ++  V  L L  ++I  V+ VI  IA+QTNLLALNAAIEAARAGEQGRGFAVVADEV
Sbjct: 487 VELSAQKVQALALHSQSIGGVIQVISTIADQTNLLALNAAIEAARAGEQGRGFAVVADEV 546

Query: 412 RNLAGRTQTSTKEIQQMIHNLQEGSRNAIQTIQICGQTSQSSVQESENAASALALIVSAL 471
           R LA RTQ ST+EI+ +I  LQ  +  A+Q +Q   Q + + +  + +A+ +L+ I   +
Sbjct: 547 RTLASRTQASTEEIRGIIQQLQSATDAAVQQMQAGQQKAHACISAASDASGSLSSISQGV 606

Query: 472 ESVSSMSHQIATAAAEQTQVSDDIARRINMIEESGSKLSRVVMESHNSTQTLTKLARELE 531
           E +  M+ QIA+AA +Q  VS+DI R +  I  S   L   +  +  +   L ++A ++ 
Sbjct: 607 ERIVEMNTQIASAAVQQHAVSEDINRNVMEIRNSSGTLMLGIDNNAVTADELARVASDMR 666

Query: 532 QWAAHFEV 539
              A F++
Sbjct: 667 NVVARFKL 674



 Score = 28.1 bits (61), Expect = 0.001
 Identities = 45/208 (21%), Positives = 91/208 (43%), Gaps = 19/208 (9%)

Query: 198 AILSLLLVAIRKILLIIGGEP-NEVRSAVQAVAQGRIRREFV-IKAPKESIYGAVQQMSS 255
           A+L++++V     L+++G    N + +++  VAQ R+ RE++ +  P        +  S+
Sbjct: 21  AVLAIIIVIP---LIVLGLRVFNSLNASIDTVAQERVGREYLQLTTPVLRTSMLQRAASN 77

Query: 256 SLADLVAKLEQSMVALRSELAGAGTRAKSIAELTDSQQQSTAMIATAMTEMASSANQVAD 315
            L    A   Q +++ R++L    T   ++A++ D++Q         +  +  S   + D
Sbjct: 78  RLLAGDASAAQDVISNRAQLE---TALANLADM-DARQGQQLETENRVQRLRESTRSLMD 133

Query: 316 S-----ARDTAFNTDQADQQSQHTQKLIHNTVSNIQGLATQLQTASTAVADLDLDVKNIA 370
           S     ++D  F   Q ++Q   T   I+  VS   G+      AS  +  +DL    + 
Sbjct: 134 SIKPGLSQDEVF--AQWNEQLAQTLNFIY-YVSATSGMVLDEDYASLFL--IDLSTIRMP 188

Query: 371 KVLDVIGDIAEQTNLLALNAAIEAARAG 398
           + ++V G I   T  L     +  +  G
Sbjct: 189 REINVAGQIRGITAGLVTGQGLSVSMRG 216