Pairwise Alignments

Query, 541 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 640 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  192 bits (488), Expect = 3e-53
 Identities = 124/358 (34%), Positives = 204/358 (56%), Gaps = 14/358 (3%)

Query: 189 LSLCVVIAVAILSLLLVAIRKILLIIGGEPNEVRSAVQAVAQGRIRREFVIKAPKES--I 246
           L +  V+ V +L +L   I  I   I     +  + V+ +A G +     +    E   +
Sbjct: 290 LQIGCVVLVMLLGILAAVI--ITRQITRPLRDTLAIVERIASGDLTHTEAVTRRDELGVL 347

Query: 247 YGAVQQMSSSLADLVAKLEQSMVALRSELAGAGTRAKSIAELT----DSQQQSTAMIATA 302
              +Q+M ++L +L++ +   +    +++A A     ++ E T    +SQ+  T  +ATA
Sbjct: 348 QQGIQRMGTTLRELISGIRDGV----TQIASAAEELSAVTEQTSAGVNSQKVETDQVATA 403

Query: 303 MTEMASSANQVADSARDTAFNTDQADQQSQHTQKLIHNTVSNIQGLATQLQTASTAVADL 362
           M EM+++ ++VA +A   +     ADQQ++   K++   +  I+ LA ++  +S A+  L
Sbjct: 404 MHEMSATVHEVARNAEQASVAASDADQQARDGDKVVGEAIQQIERLAAEVVRSSDAMNVL 463

Query: 363 DLDVKNIAKVLDVIGDIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAGRTQTST 422
           + D   I KV+DVI  +AEQTNLLALNAAIEAARAGE GRGFAVVADEVR LA RTQ ST
Sbjct: 464 EQDSDKIGKVMDVIKAVAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRGLAQRTQQST 523

Query: 423 KEIQQMIHNLQEGSRNAIQTIQICGQT-SQSSVQESENAASALALIVSALESVSSMSHQI 481
           +EI+ ++  LQ G+R  +  I +  +T + SSV+ +  A ++L  I   + S+ +M+ QI
Sbjct: 524 EEIEGLVAALQNGTRQ-VSGIMLGSRTLTDSSVELTRRAGTSLESITRTVSSIQAMNQQI 582

Query: 482 ATAAAEQTQVSDDIARRINMIEESGSKLSRVVMESHNSTQTLTKLARELEQWAAHFEV 539
           A AA +Q+ V+D+I+R I  + +   + +    E+  S+  L +L  +L+   +HF V
Sbjct: 583 AAAAEQQSSVADEISRSIVNVRDVSEQTAEASEETAASSVELARLGGQLQMMVSHFRV 640