Pairwise Alignments

Query, 541 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 521 a.a., PAS from Pseudomonas syringae pv. syringae B728a

 Score =  174 bits (442), Expect = 6e-48
 Identities = 106/297 (35%), Positives = 179/297 (60%), Gaps = 7/297 (2%)

Query: 240 KAPKESIYGAVQQMSSSLADLVAKLEQSMVALRSELAGAGTRAKSIAELTDSQQQSTAMI 299
           + P+  +  A+    + L   + +L  +  ++R     +   +   AE  D Q+      
Sbjct: 222 RGPQAQLDLAMLSEEARLQTALTRLADTGESVRQHAGRSAQLSLRQAESLDQQRSEADQS 281

Query: 300 ATAMTEMASSANQVADSARDTAFNTDQADQQSQHTQKLIHNTVSNIQGLATQLQTASTAV 359
           ATA+ +MA++  +V  + ++TA   ++AD+ +Q  + L   ++  I+ +AT +     AV
Sbjct: 282 ATAINQMAATIQEVTHNVQNTAHAAEEADKLAQQGRGLADESLLAIRHMATSVTDIGNAV 341

Query: 360 ADLDLDVKNIAKVLDVIGDIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAGRTQ 419
            +L    ++I  V+DVI  IA+QTNLLALNAAIEAARAGEQGRGFAVVADEVR+LA RTQ
Sbjct: 342 GELADATQSIGSVVDVITSIAQQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLASRTQ 401

Query: 420 TSTKEIQQMIHNLQEGSRNAIQTIQICGQTSQSSVQESENAASALALIVSALESVSSMSH 479
           +ST++IQQ+I +L++G+  A++T     Q SQ SV   E    AL  I  ++  ++ MS 
Sbjct: 402 SSTEQIQQIITSLRDGADRAVKTASKGEQISQESVASVEAVQKALDGISQSVTRITGMSQ 461

Query: 480 QIATAAAEQTQVSDDIARRINMIEESGSKLSRVVMESHNSTQTLTKLARELEQWAAH 536
           Q+A+A+ EQ+ V++ I+++I       ++++++  ES +  Q  ++++ ELE+ A +
Sbjct: 462 QMASASEEQSHVAETISQQI-------TRIAQLCDESASQAQQGSQISSELEEMAQY 511