Pairwise Alignments

Query, 541 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 640 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  187 bits (475), Expect = 1e-51
 Identities = 117/353 (33%), Positives = 198/353 (56%), Gaps = 12/353 (3%)

Query: 195 IAVAILSLLLVAIRKILLI--IGGEPNEVRSAVQAVAQGRIRREFVIKAPKES--IYGAV 250
           I   +L+++L  I  +++   I     E  + V  +A G + +   +    E   +   +
Sbjct: 292 ITCTLLAIILGIIAAVIITRQITRPLRETLAVVDRIASGDLTQTLAVTRSDELGVLQQGI 351

Query: 251 QQMSSSLADLVAKLEQSMVALRSELAGAGTRAKSIAELT----DSQQQSTAMIATAMTEM 306
           Q+M ++L +L+  +  S+V    ++A A     ++ E T    +SQ+  T  +ATAM EM
Sbjct: 352 QRMGTTLRELIGGIRDSVV----QIASAAEELSAVTEQTSAGVNSQKVETDQVATAMHEM 407

Query: 307 ASSANQVADSARDTAFNTDQADQQSQHTQKLIHNTVSNIQGLATQLQTASTAVADLDLDV 366
           +++  +VA +A   +     AD++++   K++   ++ I+ LA ++  +  A+ +L+ + 
Sbjct: 408 SATVAEVARNAEQASQAASNADREARDGDKVVGEAIAQIERLANEVGRSVDAMTELEQES 467

Query: 367 KNIAKVLDVIGDIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAGRTQTSTKEIQ 426
             I KV+DVI  +AEQTNLLALNAAIEAARAGE GRGFAVVADEVR LA RTQ ST EI+
Sbjct: 468 DKIGKVMDVIKAVAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRGLAQRTQQSTVEIE 527

Query: 427 QMIHNLQEGSRNAIQTIQICGQTSQSSVQESENAASALALIVSALESVSSMSHQIATAAA 486
            ++  LQ G+R     +    + + SSV  S  A ++L  I   + S+ +M+ QIA AA 
Sbjct: 528 TLVAALQSGTRQVSSIMLNSRELTVSSVTLSRQAGTSLGSITQTVSSIQAMNQQIAAAAE 587

Query: 487 EQTQVSDDIARRINMIEESGSKLSRVVMESHNSTQTLTKLARELEQWAAHFEV 539
           EQ+ V+++I+R I  + +   + +    E+  S+  L +L  +L+   + F +
Sbjct: 588 EQSAVAEEISRSIVNVRDVSEQTASASEETAASSVELARLGGQLQTMVSRFRI 640