Pairwise Alignments

Query, 541 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 638 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  193 bits (490), Expect = 2e-53
 Identities = 126/358 (35%), Positives = 201/358 (56%), Gaps = 12/358 (3%)

Query: 190 SLCVVIAVAILSLLL--VAIRKILLIIGGEPNEVRSAVQAVAQGRIRREFVIKAPKE--S 245
           S+ ++IA   L+++L  +A   I   I     E    V+ VA G + R   +    E   
Sbjct: 285 SVQMIIAATALAMVLGILAAWVITRQITTPLQETLEVVERVASGDLSRNLNVDRKDELGK 344

Query: 246 IYGAVQQMSSSLADLVAKLEQSMVALRSELAGAGTRAKSIAELT----DSQQQSTAMIAT 301
           +   +Q+M+ SL +LV  +   +    +++A A     ++ E T    +SQ+  T  +AT
Sbjct: 345 LQATIQRMTVSLRELVGGIRDGV----TQIASAAEELSAVTEQTSAGVNSQKVETDQVAT 400

Query: 302 AMTEMASSANQVADSARDTAFNTDQADQQSQHTQKLIHNTVSNIQGLATQLQTASTAVAD 361
           AM EM ++  +VA +A + +     AD+Q++  +++++  ++ I+ LA+ +  +S A+  
Sbjct: 401 AMHEMTATVQEVARNAEEASEAAVAADRQARDGERVVNEAIAQIERLASAVGNSSEAMGA 460

Query: 362 LDLDVKNIAKVLDVIGDIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAGRTQTS 421
           L  +   I  VLDVI  +AEQTNLLALNAAIEAARAGE GRGFAVVADEVR+LA RTQ S
Sbjct: 461 LKQESDKIGSVLDVIKSVAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRSLAQRTQKS 520

Query: 422 TKEIQQMIHNLQEGSRNAIQTIQICGQTSQSSVQESENAASALALIVSALESVSSMSHQI 481
           T+EI+ +I  LQ G++ A   +    + S SSV+ +  A  +LA I   + S+ +M+ QI
Sbjct: 521 TEEIEALIARLQSGTQQATTVMDSSRELSTSSVELTRRAGGSLANITKTVSSIQAMNQQI 580

Query: 482 ATAAAEQTQVSDDIARRINMIEESGSKLSRVVMESHNSTQTLTKLARELEQWAAHFEV 539
           A AA EQ+  +++I R I  + +   + S    E+  S+  L +L   L+   + F V
Sbjct: 581 AAAAEEQSATAEEINRSIINVRDVSEQTSAASEETAASSVELARLGNHLQVLVSRFTV 638