Pairwise Alignments

Query, 541 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 558 a.a., putative methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella amazonensis SB2B

 Score =  194 bits (493), Expect = 7e-54
 Identities = 156/560 (27%), Positives = 260/560 (46%), Gaps = 34/560 (6%)

Query: 3   LKTQAYLLSAIILAALLALTATGLWTLRVASNLDNKARVTE-LFNSAYSILTEVEKLA-- 59
           L+ +  LL+ + L  +L    +  W +   +  D+ A   E L N     L E  ++A  
Sbjct: 10  LRNKLLLLAMVPLVLILTAVMSYSWQVESQALDDSVALFKEKLVNERQQQLQEATQIALA 69

Query: 60  ---------QEGKMSEPEAKALATRLMRNNLYKDNEYVYVADENMTFVATPLDPQLHDTS 110
                    Q G +++      A R +R   +    Y ++ D     V    +P L  T 
Sbjct: 70  VVDHQISLGQNGNIND------ALRPLR---FGSAGYFFIYDYQGANVFHATNPALEGTP 120

Query: 111 FHDFKDGKGNSVGRLIQDVLRHQSGKLVEYTWTQKQADGSIEEKLSIARKTPHWGWVVGT 170
                D +G  +   + D  + + G    Y + +   +G ++ K+  A   P   W++GT
Sbjct: 121 QIGMTDPQGTKIVVGLIDAAK-RGGGFFNYVYPKPGVEGLVD-KIGYAAPIPGKDWLLGT 178

Query: 171 GIGFNEVNARFWSTAQWQLSLCVVIAVAILSLLLVAIRKILLIIGGEPNEVRSAVQAVA- 229
           G   ++++A   + +Q         AVAI  + LV     L+ I    + +   ++A+  
Sbjct: 179 GAYLDDIDAAVDTYSQSARQAMWEKAVAIFMMSLVLAFITLIAIWSAAHRMVKPIRAMVD 238

Query: 230 --------QGRIRREFVIKAPKE--SIYGAVQQMSSSLADLVAKLEQSMVALRSELAGAG 279
                   +G +     ++   E   +  A  Q    L  ++  +  +   ++       
Sbjct: 239 SLNDIAKGEGDLTARLSVRGEDEIAELGIAFNQFVDKLQGIIRDVADTTGRVKQAAVDID 298

Query: 280 TRAKSIAELTDSQQQSTAMIATAMTEMASSANQVADSARDTAFNTDQADQQSQHTQKLIH 339
            +   +A   +S    T  + TA+TEM+S+A +VA +    A  T  A       Q  + 
Sbjct: 299 RQTSEMANQLNSHNNETDQVVTAITEMSSTAAEVAQNTTQVAEATQAATGDVAKAQACVD 358

Query: 340 NTVSNIQGLATQLQTASTAVADLDLDVKNIAKVLDVIGDIAEQTNLLALNAAIEAARAGE 399
            +++ I  L +Q+  A+  +  L    + I  VL VIG IAEQTNLLALNAAIEAARAGE
Sbjct: 359 TSLAEISNLMSQVNDAAANIQSLSEQSQKINSVLSVIGGIAEQTNLLALNAAIEAARAGE 418

Query: 400 QGRGFAVVADEVRNLAGRTQTSTKEIQQMIHNLQEGSRNAIQTIQICGQTSQSSVQESEN 459
           QGRGFAVVADEVRNLA RTQ ST EI +M+ +L     +A++T+     + Q SV+ S  
Sbjct: 419 QGRGFAVVADEVRNLASRTQASTLEINEMLTDLHRLVSSAVKTMDESQHSCQRSVEASTA 478

Query: 460 AASALALIVSALESVSSMSHQIATAAAEQTQVSDDIARRINMIEESGSKLSRVVMESHNS 519
            + +L  + SA+ +++ MS QIA AA EQ+ V+++I R +  I+E  + L     E+   
Sbjct: 479 ISESLGSVTSAVTAINDMSTQIAAAATEQSSVTEEINRNVYAIQEIVNALLVSSQEARTV 538

Query: 520 TQTLTKLARELEQWAAHFEV 539
           ++T++    +L      F+V
Sbjct: 539 SRTVSTEGAQLSNLVGQFKV 558