Pairwise Alignments

Query, 541 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 541 a.a., putative methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella amazonensis SB2B

 Score =  181 bits (458), Expect = 8e-50
 Identities = 107/246 (43%), Positives = 156/246 (63%), Gaps = 9/246 (3%)

Query: 292 QQQSTAMIATAMTEMASSANQVADSARDTAFNTDQADQQSQHTQKLIHNTVSNIQGLATQ 351
           QQ  T   ATAM EM ++  +VA S+   A +   AD+ +     ++  ++S++  LA+Q
Sbjct: 294 QQSETEQTATAMNEMTAAVAEVAQSSNSAAESARNADESAARGNSIVQQSISSMSVLASQ 353

Query: 352 LQTASTAVADLDLDVKNIAKVLDVIGDIAEQTNLLALNAAIEAARAGEQGRGFAVVADEV 411
           +Q  +  + +L  + +NI +VLDVI  IAEQTNLLALNAAIEAARAGEQGRGFAVVADEV
Sbjct: 354 IQGTAAVIGELATESQNIGRVLDVIKSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEV 413

Query: 412 RNLAGRTQTSTKEIQQMIHNLQEGSRNAIQTIQICGQTSQSSVQESENAA-SALALIVSA 470
           R LA RT  ST+EI+ MI +LQ+G ++A+ +++  G     +  ES NAA SAL  IV++
Sbjct: 414 RTLAQRTSESTREIESMIESLQQGVKSAVNSME-QGIAQVDNANESTNAAGSALQDIVAS 472

Query: 471 LESVSSMSHQIATAAAEQTQVSDDIARRINMIEESGSKLSRVVMESHNSTQTLTKLAREL 530
           ++S++ ++  IATAA EQ+ V++ I + I  I       S +  ES  +   L++   +L
Sbjct: 473 VDSITQLNTHIATAADEQSCVAESINQSIIAI-------SDIAQESTQAANDLSEAVHQL 525

Query: 531 EQWAAH 536
            Q A H
Sbjct: 526 AQLAGH 531



 Score = 43.5 bits (101), Expect = 2e-08
 Identities = 49/247 (19%), Positives = 101/247 (40%), Gaps = 45/247 (18%)

Query: 299 IATAMTEMASSANQVADSARDTAFNTDQADQQSQHTQKLIHNTVSNIQGLATQLQTASTA 358
           + T +TE+     Q+ + +  T   T   D +  H  K ++  V++++G+          
Sbjct: 213 VMTPVTEIRQKLRQIREKSDMTVSFTVFRDDELGHIAKDLNGVVNHLKGI---------- 262

Query: 359 VADLDLDVKNIAKVLDVIGDIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAGRT 418
                  +KNIA+    +GD A++ N     A     +   +    A   +E+       
Sbjct: 263 -------LKNIAEAASTLGDSADELNEFTRQANDRMFKQQSETEQTATAMNEM------- 308

Query: 419 QTSTKEIQQMIHNLQEGSRNAIQTIQICGQTSQSSVQESENAASALALIVSALESVSSMS 478
             +  E+ Q  ++  E +RNA ++         S VQ+S    S+++++ S ++  +++ 
Sbjct: 309 TAAVAEVAQSSNSAAESARNADES----AARGNSIVQQS---ISSMSVLASQIQGTAAVI 361

Query: 479 HQIATAAAEQTQVSD---DIARRINMIE-----------ESGSKLSRVVMESHNSTQTLT 524
            ++AT +    +V D    IA + N++            E G   + V  E     Q  +
Sbjct: 362 GELATESQNIGRVLDVIKSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLAQRTS 421

Query: 525 KLARELE 531
           +  RE+E
Sbjct: 422 ESTREIE 428



 Score = 37.0 bits (84), Expect = 2e-06
 Identities = 58/230 (25%), Positives = 96/230 (41%), Gaps = 22/230 (9%)

Query: 219 NEVRSAVQAVAQG-RIRREFVIKAPKESIYG--AVQQMSSSLADLVAKLEQSMVALRSEL 275
           NE+ +AV  VAQ      E    A + +  G   VQQ  SS++ L +++ Q   A+  EL
Sbjct: 306 NEMTAAVAEVAQSSNSAAESARNADESAARGNSIVQQSISSMSVLASQI-QGTAAVIGEL 364

Query: 276 AGAGTRA-------KSIAELTDSQQQSTAMIATAMTEMASSANQVADSARDTAFNTDQAD 328
           A             KSIAE T+    + A+ A    E       VAD  R  A  T    
Sbjct: 365 ATESQNIGRVLDVIKSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLAQRT---- 420

Query: 329 QQSQHTQKLIHNTVSNIQGLATQLQTASTAVADLDLDVKNIAKVLDVIGDI-AEQTNLLA 387
             S+ T+++     S  QG+ + + +    +A +D   ++       + DI A   ++  
Sbjct: 421 --SESTREIESMIESLQQGVKSAVNSMEQGIAQVDNANESTNAAGSALQDIVASVDSITQ 478

Query: 388 LNAAIEAARAGEQGRGFAVVADEVRNLAGRTQTSTK---EIQQMIHNLQE 434
           LN  I A  A EQ      +   +  ++   Q ST+   ++ + +H L +
Sbjct: 479 LNTHI-ATAADEQSCVAESINQSIIAISDIAQESTQAANDLSEAVHQLAQ 527



 Score = 34.3 bits (77), Expect = 1e-05
 Identities = 29/136 (21%), Positives = 54/136 (39%), Gaps = 8/136 (5%)

Query: 219 NEVRSAVQAVAQGRIRREFVIKAPKESIYGAVQQMSSSLADLVAKLEQSMVALRSELAGA 278
           +EVR+  Q  ++     E +I++ ++ +  AV  M   +A +    E +  A        
Sbjct: 411 DEVRTLAQRTSESTREIESMIESLQQGVKSAVNSMEQGIAQVDNANESTNAA-------- 462

Query: 279 GTRAKSIAELTDSQQQSTAMIATAMTEMASSANQVADSARDTAFNTDQADQQSQHTQKLI 338
           G+  + I    DS  Q    IATA  E +  A  +  S    +    ++ Q +    + +
Sbjct: 463 GSALQDIVASVDSITQLNTHIATAADEQSCVAESINQSIIAISDIAQESTQAANDLSEAV 522

Query: 339 HNTVSNIQGLATQLQT 354
           H        + TQ+ T
Sbjct: 523 HQLAQLAGHMRTQVGT 538