Pairwise Alignments

Query, 541 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 649 a.a., putative methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella amazonensis SB2B

 Score =  196 bits (497), Expect = 3e-54
 Identities = 121/346 (34%), Positives = 191/346 (55%), Gaps = 26/346 (7%)

Query: 193 VVIAVAILS----LLLVAIRKILLIIGGEPNEVRSAVQAVAQGRIRREFVIKAPKESIYG 248
           VV+A+A +     L +  +R I   +GGEP E+ S  + +A G + + F ++     IY 
Sbjct: 300 VVVAIAAMLMAIWLAITVVRAIRRPVGGEPREIASIAREIAGGNLGQNF-LREGSTGIYA 358

Query: 249 AVQQMSSSLADLVAKLEQSMVALRSELAGAGTRAKSIAELTDSQQQSTAMIATAMTEMAS 308
           A+ +M+ +L  +V++L  +   L    +G     +   + ++SQ    A  A+AM EM  
Sbjct: 359 AMAEMNDNLRRIVSELNDASRTLGDSSSGMLGVTEESRKNSESQADQLAHTASAMQEMTH 418

Query: 309 SANQVADSARDTAFNTDQADQQSQHTQKLIHNTVSNIQGLATQLQTASTAVADLDLDVKN 368
           + + +A +A+  +    +AD  +Q    ++ +T  +I  L   +   S  + +L+ + +N
Sbjct: 419 TVDDIARNAQRASEMASEADHHAQEGMGVVEDTRRSIMVLVDNITDVSGIIENLEKETEN 478

Query: 369 IAKVLDVIGDIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAGRTQTSTKEIQQM 428
           +  +LDVI  IAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLA RTQ ST+EIQ +
Sbjct: 479 VGSILDVIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLASRTQNSTEEIQAL 538

Query: 429 IHNLQEGSRNAIQTIQICGQTSQSSVQESENAASALALIVSALESVSSMSHQIATAAAEQ 488
           I  LQ  SR +++++++    +  + +++  A +AL  I  ++ ++  M+HQIA AA EQ
Sbjct: 539 IGRLQAESRRSVESMRVNVTEATQTSEKANKAIAALGAIADSVMAIRDMNHQIAVAAEEQ 598

Query: 489 TQV---------------------SDDIARRINMIEESGSKLSRVV 513
             V                     S+ +    N I E  SKLS +V
Sbjct: 599 ATVVGTINVSVEEISGLARMNAAGSEQVQNSANGISEISSKLSGIV 644