Pairwise Alignments

Query, 541 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 554 a.a., putative methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella amazonensis SB2B

 Score =  247 bits (630), Expect = 1e-69
 Identities = 179/541 (33%), Positives = 281/541 (51%), Gaps = 33/541 (6%)

Query: 18  LLALTATGLWTLRVASNLDN------KARVTELFNSAYSILTEVEKLAQEGKMSEPEAKA 71
           LL+L AT L  +    N+D       +AR+  L + A SI+T+ +  AQ G++SE +AKA
Sbjct: 28  LLSLVATLLMFVFALRNMDTVLVQEKEARLNALTDIAISIITDFQGKAQSGELSEADAKA 87

Query: 72  LATRLMRNNLYKDNEYVYVADENMTFVATPLDPQLHDTSFHDFKDGKGNSVGRLIQDVLR 131
            A   + N  Y   EY +  D     +  P   +L DT+     D  G  +   +  + +
Sbjct: 88  KALSALDNLRYSGKEYYFTIDRQGMMIQHPFAKKLVDTNVLGMADPNGVKLFAEMIRLTQ 147

Query: 132 HQSGKLVEYTWTQKQADGSIEEKLSIARKTPHWGWVVGTGIGFNEVNARFWSTAQWQLSL 191
           +    LV Y W Q  AD     K+S+ ++   WGW+VGTGI  +++ A+        L +
Sbjct: 148 NSDSALVNYMWNQPDADAP-SPKMSVVKRFSEWGWIVGTGIYVDDIAAQKQEFTWQYLLV 206

Query: 192 CVVIAVAILSLLLVAIRKILLIIGGEP-NEVRSAVQAVAQG------RIRREFVIKAPKE 244
            +++   +++LLL+  R +      EP      A + +A+G      R+      +  + 
Sbjct: 207 FLLVWGPVMALLLMISRSVT-----EPLQRTLMAFKNIAEGEANLTLRLEERGRDELSQV 261

Query: 245 SIY-----GAVQQMSSSLADLVAKLEQSMVALRSELAGAGTRAKSIAELTDSQQQSTAMI 299
           S+Y     G +Q +  S+ D V    Q    L S L+    +A   A  T+S QQ T  +
Sbjct: 262 SVYFNAFVGRIQSLVISVRDSVDHSRQ----LSSSLSNVAHQA---AHATNSMQQETQSV 314

Query: 300 ATAMTEMASSANQVADSARDTAFNTDQADQQSQHTQKLIHNTVSNIQGLATQLQTASTAV 359
           A A+ +M+++A++VA +A+  A +   AD Q+  T  ++ + + N++ L+++L+  S   
Sbjct: 315 AAAINQMSATASEVAANAQLAAKSAKNADSQADSTNLVVTHAMGNVRQLSSELEETSEIA 374

Query: 360 ADLDLDVKNIAKVLDVIGDIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAGRTQ 419
             L +    I ++LDVI  IAEQTNLLALNAAIEAARAGE GRGFAVVADEVR LA RTQ
Sbjct: 375 KALKVSSGEIGQILDVIVGIAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRTLASRTQ 434

Query: 420 TSTKEIQQMIHNLQEGSRNAIQTIQICGQTSQSSVQESENAASALALIVSALESVSSMSH 479
            ST+EI  +I  ++        ++    Q S ++V E+     AL LI  A+  ++ M+ 
Sbjct: 435 QSTQEINAIIEAIRGAVDKVNASVARARQQSDNTVDETAQVMDALGLIKQAIGQINDMNL 494

Query: 480 QIATAAAEQTQVSDDIARRINMIEE-SGSKLSRVVMESHNSTQTLTKLARELEQWAAHFE 538
           QIATA  EQ+ V  ++   IN I E S   LS+     H S + + + +R++ Q  A F+
Sbjct: 495 QIATATDEQSAVIAELNENINRINEISVENLSKSETVGHTSDR-IAEDSRQMAQLIAVFK 553

Query: 539 V 539
           V
Sbjct: 554 V 554