Pairwise Alignments

Query, 541 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 666 a.a., putative methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella amazonensis SB2B

 Score =  179 bits (453), Expect = 4e-49
 Identities = 109/298 (36%), Positives = 169/298 (56%), Gaps = 14/298 (4%)

Query: 244 ESIYGAVQQMSSSLADLVAKLEQSMVALRSELAGAGTRAKSIAELTDSQQQSTAMIATAM 303
           E++   V+  S  + D V ++E     +R ++A   + A+ +A              +AM
Sbjct: 382 EAVIHQVKTNSLKVTDAVKRMESHSNQMRHDVAQGHSEAEQVA--------------SAM 427

Query: 304 TEMASSANQVADSARDTAFNTDQADQQSQHTQKLIHNTVSNIQGLATQLQTASTAVADLD 363
           TEM+++ +Q+A +A + A  + +A+Q+++   K + NT   I  LA+++  A+ A+  LD
Sbjct: 428 TEMSATVSQIASNAVEAASASGKANQEARTGNKEVGNTGKTISALASEIDAAAIAITKLD 487

Query: 364 LDVKNIAKVLDVIGDIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAGRTQTSTK 423
            D++ I  VL+VI  IAEQTNLLALNAAIEAARAGE GRGFAVVADEVR+LA R Q+ST 
Sbjct: 488 TDIQGIVSVLEVISGIAEQTNLLALNAAIEAARAGEMGRGFAVVADEVRSLAQRAQSSTT 547

Query: 424 EIQQMIHNLQEGSRNAIQTIQICGQTSQSSVQESENAASALALIVSALESVSSMSHQIAT 483
           +I+ M   L+EG+R A+  +      +Q+SVQE  +A   L  IV  +  + SM+ QIA 
Sbjct: 548 DIRTMTERLKEGARVAVDAMSRGQTQAQASVQEVNHAGEELRRIVDYVSVIDSMNEQIAA 607

Query: 484 AAAEQTQVSDDIARRINMIEESGSKLSRVVMESHNSTQTLTKLARELEQWAAHFEVTR 541
           A  EQ+ V++++ R    I E      +V  E       L      + +  + F ++R
Sbjct: 608 ATHEQSAVAEEVNRNALRISEIYQNTHQVADELGRINDDLLSAVDAMGKEVSKFSLSR 665



 Score = 32.0 bits (71), Expect = 8e-05
 Identities = 29/133 (21%), Positives = 55/133 (41%), Gaps = 12/133 (9%)

Query: 409 DEVRNLAGRTQTSTKEIQQMIHNLQEGSRNAIQTIQICGQTSQSSVQESENAASALALIV 468
           DE+ +L         + + +IH ++  S      ++     S     +     S    + 
Sbjct: 365 DELGSLGNAFNGMMNDFEAVIHQVKTNSLKVTDAVKRMESHSNQMRHDVAQGHSEAEQVA 424

Query: 469 SALESVSSMSHQIATAAAEQTQVSDDIARRINMIEESGSKLSRVVMESHNSTQTLTKLAR 528
           SA+  +S+   QIA+ A E    S     + N    +G+K      E  N+ +T++ LA 
Sbjct: 425 SAMTEMSATVSQIASNAVEAASASG----KANQEARTGNK------EVGNTGKTISALAS 474

Query: 529 ELEQWAAHFEVTR 541
           E++  AA   +T+
Sbjct: 475 EID--AAAIAITK 485