Pairwise Alignments

Query, 541 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 660 a.a., putative methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella amazonensis SB2B

 Score =  198 bits (504), Expect = 5e-55
 Identities = 123/357 (34%), Positives = 216/357 (60%), Gaps = 12/357 (3%)

Query: 190 SLCVVIAVAILSLLLVA---IRKILLIIGGEPNEVRSAVQAVAQGRIRREFVIKAPKESI 246
           SL +V+ +++L ++  A   +R +L  +GGEP  ++   + VA G +  +F  ++ K  +
Sbjct: 309 SLWIVLGISVLVVVGFARLILRSVLRPLGGEPAVMQHISERVAGGDLAIDFC-QSEKTGV 367

Query: 247 YGAVQQMSSSLADLVAKLEQSMVALRSELAGAGTRAKSIAELTDS----QQQSTAMIATA 302
           Y A++ MS +L +LV+++    V +  +L+ A  + +  +E T+     QQ +   ++ +
Sbjct: 368 YLAMETMSHNLRELVSRI----VGITEQLSAASEQTRVASEETNQSLFQQQANIERVSAS 423

Query: 303 MTEMASSANQVADSARDTAFNTDQADQQSQHTQKLIHNTVSNIQGLATQLQTASTAVADL 362
           + EM ++   VA +AR  A +T  A   SQ   K + + +  I GLA+ +  A+  +  +
Sbjct: 424 INEMTATIADVAHNARQVADSTQAAYGLSQIADKQVRSNIGTINGLASAITEATNVIRSV 483

Query: 363 DLDVKNIAKVLDVIGDIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAGRTQTST 422
           +L  + I+KVL+VI  IA+QTNLLALNAAIEAARAGEQGRGFAVVADEVR LA +T  ST
Sbjct: 484 ELQSQGISKVLEVIRGIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRQLAQKTAQST 543

Query: 423 KEIQQMIHNLQEGSRNAIQTIQICGQTSQSSVQESENAASALALIVSALESVSSMSHQIA 482
           ++I++MI  LQ+G++NA+  +       Q +V  +E  A A+      +ES+++ + QIA
Sbjct: 544 RDIEEMIALLQQGTQNAVGVMGESTVHLQQTVDSAECTAEAIRNTHIEIESIAANAEQIA 603

Query: 483 TAAAEQTQVSDDIARRINMIEESGSKLSRVVMESHNSTQTLTKLARELEQWAAHFEV 539
           TAA++QT  +++I++ + +I ++ S  +    ++  ++  L++LA +L+     F +
Sbjct: 604 TAASQQTLAAEEISQSLAVISDAASVNAASSEQTAVASTQLSELALDLKSITGRFNI 660