Pairwise Alignments

Query, 541 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 705 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  182 bits (461), Expect = 5e-50
 Identities = 119/347 (34%), Positives = 196/347 (56%), Gaps = 4/347 (1%)

Query: 190 SLCVVIAVAILSLLLVAIRKILLIIGGEPNEVRSAVQ--AVAQGRIRREFVIKAPKESIY 247
           SL +++ V +  + +V I  ++  I      ++S V+  A A+G + ++  +++  E I 
Sbjct: 352 SLLLIVGVIVSLIAVVTISLVIRSIVAPLKVIQSRVENLASAEGDLTQQVTVESHAELIA 411

Query: 248 --GAVQQMSSSLADLVAKLEQSMVALRSELAGAGTRAKSIAELTDSQQQSTAMIATAMTE 305
             G +    + L  L+ +L++     ++E   A   A+      + Q      + TA+ E
Sbjct: 412 LGGGINGFINKLRLLIGELKELASRSQAESQVAAEIAQQTHNSVNRQYSDIESVVTAVNE 471

Query: 306 MASSANQVADSARDTAFNTDQADQQSQHTQKLIHNTVSNIQGLATQLQTASTAVADLDLD 365
           M+++A +VA ++  TA  T+      +  +  +   +  +  ++ +   A  AV  +   
Sbjct: 472 MSATALEVAKASEQTASETEAMTLNVKAGEDSLSQAMGYVTHMSQESLLAKEAVGKVAES 531

Query: 366 VKNIAKVLDVIGDIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAGRTQTSTKEI 425
             NI+K+L+VI  IAEQTNLLALNAAIEAARAGEQGRGFAVVADEVR LA +TQ+ST EI
Sbjct: 532 STNISKILEVISAIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALASKTQSSTDEI 591

Query: 426 QQMIHNLQEGSRNAIQTIQICGQTSQSSVQESENAASALALIVSALESVSSMSHQIATAA 485
            ++I  LQ    +A Q I      +Q +V ++E+A S+L  IV+ ++ VSS    IATAA
Sbjct: 592 GKLIEALQREVNSASQIIDQGVDGAQRAVAQTESALSSLNTIVNQIQEVSSQVTHIATAA 651

Query: 486 AEQTQVSDDIARRINMIEESGSKLSRVVMESHNSTQTLTKLARELEQ 532
            EQ+ V+++++R I  I +S S+L+R+  E+  S+ +L  L  +  Q
Sbjct: 652 EEQSAVTEEVSRNITGISDSASELARLADEAQQSSASLAGLVEQQHQ 698



 Score = 33.1 bits (74), Expect = 4e-05
 Identities = 44/234 (18%), Positives = 99/234 (42%), Gaps = 24/234 (10%)

Query: 219 NEVRSAVQAVAQGRIRREFVIKAPKESIYGAVQQMSSSLADLVAKLEQSMVALRS--ELA 276
           NE+ +    VA+   +     +A   ++      +S ++  +    ++S++A  +  ++A
Sbjct: 470 NEMSATALEVAKASEQTASETEAMTLNVKAGEDSLSQAMGYVTHMSQESLLAKEAVGKVA 529

Query: 277 GAGTRAKSIAELTDSQQQSTAMIA-TAMTEMASSANQ------VADSARDTAFNTDQADQ 329
            + T    I E+  +  + T ++A  A  E A +  Q      VAD  R  A  T  +  
Sbjct: 530 ESSTNISKILEVISAIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALASKTQSSTD 589

Query: 330 QSQHTQKLIHNTVSNIQGLATQ-LQTASTAVADLDLDVKNIAKVLDVIGDIAEQTNLLAL 388
           +     + +   V++   +  Q +  A  AVA  +  + ++  +++ I +++ Q   +A 
Sbjct: 590 EIGKLIEALQREVNSASQIIDQGVDGAQRAVAQTESALSSLNTIVNQIQEVSSQVTHIAT 649

Query: 389 NAAIEAARAGEQGRGF----------AVVADEVR----NLAGRTQTSTKEIQQM 428
            A  ++A   E  R            A +ADE +    +LAG  +   +++ ++
Sbjct: 650 AAEEQSAVTEEVSRNITGISDSASELARLADEAQQSSASLAGLVEQQHQQLGKL 703



 Score = 26.6 bits (57), Expect = 0.003
 Identities = 38/190 (20%), Positives = 68/190 (35%), Gaps = 27/190 (14%)

Query: 188 QLSLCVVIAVAILSLLLVAIRKILLIIGGEPNE-----VRSAVQAVAQGRIRREFVIKAP 242
           Q SL    AV  ++     I KIL +I     +     + +A++A   G   R F + A 
Sbjct: 516 QESLLAKEAVGKVAESSTNISKILEVISAIAEQTNLLALNAAIEAARAGEQGRGFAVVAD 575

Query: 243 K-ESIYGAVQQMSSSLADLVAKLEQSMVALRSELAGAGTRAKSIAELTDSQQQSTAMIAT 301
           +  ++    Q  +  +  L+  L++ + +    +      A+     T+S   S   I  
Sbjct: 576 EVRALASKTQSSTDEIGKLIEALQREVNSASQIIDQGVDGAQRAVAQTESALSSLNTIVN 635

Query: 302 AMTEMASSANQVA---------------------DSARDTAFNTDQADQQSQHTQKLIHN 340
            + E++S    +A                     DSA + A   D+A Q S     L+  
Sbjct: 636 QIQEVSSQVTHIATAAEEQSAVTEEVSRNITGISDSASELARLADEAQQSSASLAGLVEQ 695

Query: 341 TVSNIQGLAT 350
               +  L T
Sbjct: 696 QHQQLGKLKT 705