Pairwise Alignments

Query, 541 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 548 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  229 bits (584), Expect = 2e-64
 Identities = 153/540 (28%), Positives = 281/540 (52%), Gaps = 21/540 (3%)

Query: 13  IILAALLALTATGLWTLRVASNLDN------KARVTELFNSAYSILTEVEKLAQEGKMSE 66
           ++   LLA+ ATG+  +   +N++       +A+++ L +    ++++  + +Q G MSE
Sbjct: 17  LLFMLLLAIVATGIMFVFALANIEEVLVKEKQAKLSALSDVGEKVISQFYEASQAGSMSE 76

Query: 67  PEAKALATRLMRNNLYKDNEYVYVADENMTFVATPLDPQLHDTSFHDFKDGKGNSVGRLI 126
            EAK  A   +    Y+ NEY +  D     V      +L  T+    KD  G  +   +
Sbjct: 77  EEAKRNAIAALDALRYEGNEYFWTIDRQGIMVQHAFAKKLVGTNVLGMKDPNGVRLFEKM 136

Query: 127 QDVLRHQSGKLVEYTWTQKQADGSIEEKLSIARKTPHWGWVVGTGIGFNEVNARFWSTAQ 186
                +    L+EY W +  A      K+S+ ++   WGW+VGTGI  +++     +   
Sbjct: 137 VTGTANSDYALIEYMWNRPNASAP-SPKMSVVKRFTPWGWIVGTGIYVDDIQEEMQAFIY 195

Query: 187 WQLSLCVVIAVAILSLLLVAIRKILLIIGGEPNEVRSAVQAVAQGRIRREFVIKAPKESI 246
             L +C+ + + ++ +L V  R I   +     +  +A + +A+G    +  ++  +ES 
Sbjct: 196 KYLLICIAVWLPVILILGVISRSISAPMA----DTIAAFENIARGE--GDLTLRL-EESG 248

Query: 247 YGAVQQMSSSLADLVAKLEQSMVALRSELAGAGTRAKSIAEL-------TDSQQQSTAMI 299
              ++Q+++S  + VAK++  + ++ + +  +   A+ +A++       T + Q  T  +
Sbjct: 249 RDELKQVAASFNEFVAKIQALVNSVSASVTHSRELAEGLADISAQASMVTANMQAETQSV 308

Query: 300 ATAMTEMASSANQVADSARDTAFNTDQADQQSQHTQKLIHNTVSNIQGLATQLQTASTAV 359
           ATA+ EM+ ++++VA +A+  A +   AD ++  T  ++   V+ I+GL+ +L+  +   
Sbjct: 309 ATAINEMSMASSEVASNAQLAADSAGSADGEADDTVAVVDGAVAKIKGLSNELEVTADEA 368

Query: 360 ADLDLDVKNIAKVLDVIGDIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAGRTQ 419
             L +    I ++LDVI  IAEQTNLLALNAAIEAARAGE GRGFAVVADEVR LA RTQ
Sbjct: 369 QALQISSGKIGQILDVIVGIAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRTLASRTQ 428

Query: 420 TSTKEIQQMIHNLQEGSRNAIQTIQICGQTSQSSVQESENAASALALIVSALESVSSMSH 479
            ST+EI  +I  ++    +   ++      S+ +V E+     AL  I S++  +S M+ 
Sbjct: 429 ESTQEINAIIEAIRASVDSVNASVARAKAQSEQTVGETSQVVEALQTIKSSIRQISDMNI 488

Query: 480 QIATAAAEQTQVSDDIARRINMIEESGSKLSRVVMESHNSTQTLTKLARELEQWAAHFEV 539
           QIATA  EQ+ V  ++   +  I +   +  +   E  ++++ +   + +LE   + F++
Sbjct: 489 QIATATEEQSAVIAELNMNVTRINDISLENQQKSEEIGSTSEQIKSGSADLESLISTFKL 548