Pairwise Alignments

Query, 541 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 662 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  174 bits (440), Expect = 1e-47
 Identities = 103/288 (35%), Positives = 170/288 (59%), Gaps = 14/288 (4%)

Query: 250 VQQMSSSLADLVAKLEQSMVALRSELAGAGTRAKSIAELTDSQQQSTAM-------IATA 302
           + Q+ S+   ++A  E+ +  +R+   G  T ++ +       ++  A+       +A+A
Sbjct: 367 IGQLGSAFNHMMADFEKVIGMVRTNTQGLLTASQEMEGCARIMREDVALGHSEVDQVASA 426

Query: 303 MTEMASSANQVADSARDTAFNTDQADQQSQHTQKLIHNTVSNIQGLATQLQTASTAVADL 362
           MTEM+++  ++A +A   +  + QA+++++     +  T  +I  LA ++  A+ A+ +L
Sbjct: 427 MTEMSATVQEIAQNAVQASEASAQANKEAKEGSLEVERTADSINELAQEIADAAQAINNL 486

Query: 363 DLDVKNIAKVLDVIGDIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAGRTQTST 422
           D D+K I  VL VI  IAEQTNLLALNAAIEAARAGE GRGFAVVADEVR+LA R QTST
Sbjct: 487 DEDIKGIVDVLGVISGIAEQTNLLALNAAIEAARAGEMGRGFAVVADEVRSLAQRAQTST 546

Query: 423 KEIQQMIHNLQEGSRNAIQTIQICGQTSQSSVQESENAASALALIVSALESVSSMSHQIA 482
           ++I+ M   L+ G++ A++ ++     ++ SV ES+ A   L  IVS +  + SM+ QIA
Sbjct: 547 EDIRSMTERLERGAKIAVKAMESGRNKAEISVVESKRAGEELIRIVSEVSVIDSMNEQIA 606

Query: 483 TAAAEQTQVSDDIARRINMIEESGSKLSRVVMESHNSTQTLTKLAREL 530
            A  EQ+ VS++       + ++  K+S +   +H  +  L++L   L
Sbjct: 607 AATHEQSAVSEE-------VNQNAMKISDIYRNTHEVSDRLSQLNESL 647