Pairwise Alignments

Query, 541 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 674 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  192 bits (488), Expect = 3e-53
 Identities = 124/360 (34%), Positives = 198/360 (55%), Gaps = 9/360 (2%)

Query: 184 TAQWQLSLCVVIAVAILSLLLVAIRKILLIIGGEPNEVRSAVQAVAQGRIRREFVIKAPK 243
           +A ++    V+IA+ +  L+ +A+ + L       ++V +A+  +A G +  +       
Sbjct: 320 SASYKTLALVLIAIVVAVLVSIAVIRPLK---NSLDKVNNALNILASGNLTHKLDDSGHD 376

Query: 244 ESIYGAVQQMSSSLADLVAKLEQSMVALRSELAGAGTRAKSIAELTDS----QQQSTAMI 299
           E  +  + +  + L D +  L Q ++   ++LA A     +I   T +    Q+     +
Sbjct: 377 E--FAELSRNCNRLVDSLRTLIQGILDRSNQLAAAAEETSAITAQTTAGIQEQKNQVDQV 434

Query: 300 ATAMTEMASSANQVADSARDTAFNTDQADQQSQHTQKLIHNTVSNIQGLATQLQTASTAV 359
           ATA T+++SSA QV+ SA +      QAD+++QH + +       I  LA ++  A   +
Sbjct: 435 ATATTQLSSSAMQVSTSADEALNQIRQADEEAQHMRAIADENKRTILALADEVAKAGQVI 494

Query: 360 ADLDLDVKNIAKVLDVIGDIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAGRTQ 419
             +  D  +I  +LDVI  IAEQTNLLALNAAIEAARAGEQGRGFAVVADEVR+LA RTQ
Sbjct: 495 NKVHSDSASIGSILDVIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLASRTQ 554

Query: 420 TSTKEIQQMIHNLQEGSRNAIQTIQICGQTSQSSVQESENAASALALIVSALESVSSMSH 479
            ST+EIQQMI  LQ+G++ A+  +++  Q + S V+++E A  AL  I +A+        
Sbjct: 555 DSTQEIQQMIQVLQQGTQEAVSVMELGRQQANSCVEKTEQANVALESISNAVHYAHDSGT 614

Query: 480 QIATAAAEQTQVSDDIARRINMIEESGSKLSRVVMESHNSTQTLTKLARELEQWAAHFEV 539
            IA AA EQ  VS  ++ ++  I     + +    ++  S+  + +LA EL+     F+V
Sbjct: 615 HIANAAQEQNLVSQQVSEKLEHIAAISEETATGADQTAQSSHQVAQLAEELQASVGEFKV 674