Pairwise Alignments

Query, 541 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 554 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  207 bits (526), Expect = 1e-57
 Identities = 159/560 (28%), Positives = 276/560 (49%), Gaps = 32/560 (5%)

Query: 1   MKLKTQAYLLSAIILAALLALTAT----------GLWTLRVASNLDNKARVTELFNSAYS 50
           MK K   + L  +IL+ L  ++ T           + T + +   + KA++ +  + A  
Sbjct: 6   MKNKLLVFALLPLILSFLFLVSITYNLESNSLEENMSTFKASLYSERKAQLKDQVDIALD 65

Query: 51  ILTEVEKLAQEGKMSEPEAKALATRLMRNNLYKDNEYVYVADENMTFVATPLDPQLHDTS 110
           I+     L   G ++         + +RN  +    Y ++ D +       + P L  T+
Sbjct: 66  IVEHQLSLGTAGDVN---------KALRNVRFGTAGYFFIYDFDGFNRFHAVKPALEGTA 116

Query: 111 FHDFKDGKGNSVGRLIQDVLRHQSGKLVEYTWTQKQADGSIEEKLSIARKTPHWGWVVGT 170
                D  G  +   + D  R   G    Y +++    G +  K+  A   P   W++GT
Sbjct: 117 QIGMTDPNGKKIVVGLIDAARSGDG-FFNYDYSKPGVTGLVP-KIGYAATVPGKDWILGT 174

Query: 171 GIGFNEVNARFWSTAQWQLSLCVVIAVAIL--SLLLVAIRKILLIIGGEP--NEVRSAVQ 226
           G   ++++A+  S  +         A+ IL  +L+LVAI  +++++  +   N + + VQ
Sbjct: 175 GAYTDDIDAQVESYREVMTKHMNDKAMMILLFALVLVAITAVVMLVAAQRMVNPIHNMVQ 234

Query: 227 -----AVAQGRIRREFVIKAPKE--SIYGAVQQMSSSLADLVAKLEQSMVALRSELAGAG 279
                A  +G + +   ++   E   +  A  Q    L  ++  + ++ V ++S      
Sbjct: 235 NLEDIAKGEGDLTKRLDVQGSDEIAMLGRAFNQFVDKLQGIIKDVARATVEVKSGADNIS 294

Query: 280 TRAKSIAELTDSQQQSTAMIATAMTEMASSANQVADSARDTAFNTDQADQQSQHTQKLIH 339
           ++  ++A+   S    T  + TA+TEM+++A++VA S    A  T  A Q   + Q+ + 
Sbjct: 295 SQTAAMAQQLISHNNETDQVVTAITEMSATASEVAMSTTQVAEATQAATQDVGNAQECVD 354

Query: 340 NTVSNIQGLATQLQTASTAVADLDLDVKNIAKVLDVIGDIAEQTNLLALNAAIEAARAGE 399
           +++  +  L  ++  A+  +  L+   + I  VL VIG IAEQTNLLALNAAIEAARAGE
Sbjct: 355 SSLHEVSTLMAEIDMAAGHINSLNEQSQKINSVLSVIGGIAEQTNLLALNAAIEAARAGE 414

Query: 400 QGRGFAVVADEVRNLAGRTQTSTKEIQQMIHNLQEGSRNAIQTIQICGQTSQSSVQESEN 459
           QGRGFAVVADEVR+LA RTQ ST EI +M+  L      A+ +++   Q+   SV  S  
Sbjct: 415 QGRGFAVVADEVRSLASRTQASTLEINEMLSELHNLVSLAVSSMESSQQSCHRSVTSSRA 474

Query: 460 AASALALIVSALESVSSMSHQIATAAAEQTQVSDDIARRINMIEESGSKLSRVVMESHNS 519
            + +L  + SA+ S++ MS QIATAA EQ+ V+++I R +  I+E  ++L +    + ++
Sbjct: 475 ISDSLGAVTSAVTSINDMSTQIATAATEQSSVTEEINRNVFAIQEIVNELLQASNSASDT 534

Query: 520 TQTLTKLARELEQWAAHFEV 539
           +Q L    R L+     F+V
Sbjct: 535 SQGLANEGRNLDTLVGQFKV 554