Pairwise Alignments

Query, 541 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 640 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  188 bits (478), Expect = 5e-52
 Identities = 146/486 (30%), Positives = 238/486 (48%), Gaps = 27/486 (5%)

Query: 61  EGKMSEPEAKALATRLMRNNL--YKDNEY--VYVADENMTFVATPLDPQLHDTSFHDFKD 116
           EGK S      L+   + +N+  YK  E   VY+ D N          ++H  S   F  
Sbjct: 173 EGKPSGVAGVGLSLNSLADNIKQYKIGEQGRVYLTDGNGQI-------KIHGQS--QFAG 223

Query: 117 GKGNSVGRLIQDVLRHQSGKLVEYTWTQKQADGSIEEKLSIARKTPHWGWVVGTGIGFNE 176
            + +++G      ++     L + T+   + D +  + L  +R  P  GW +   +  +E
Sbjct: 224 KQLSALG------IKDPQALLSQQTFATSEYDNNGVDTLVASRYIPSIGWYLIAEVPQDE 277

Query: 177 VNARFWSTAQWQLSLCVVIAVAILSLLLVAIRKILLIIGGEPNEVRSAVQAVAQGRIRRE 236
           +     + A WQL+L  +I  AI+      +   L+   GE   +   ++++ +G     
Sbjct: 278 LFGAI-NKASWQLALMGLILAAIIMFTSAWLINRLISPFGE---LADMLKSIGEGEGDLS 333

Query: 237 FVIKAPKESIYGAVQQMSSSLADLVAKLEQSMVALRSELAGAGTR----AKSIAELTDSQ 292
             +   ++   G++    +     ++K  QS+ A  ++L  A  R    AK +    + Q
Sbjct: 334 LRLDDSRQDETGSMAASYNQFVTYLSKTLQSVSATANDLFQAVERIDNQAKHMEHEINDQ 393

Query: 293 QQSTAMIATAMTEMASSANQVADSARDTAFNTDQADQQSQHTQKLIHNTVSNIQGLATQL 352
                 +ATA+ EM  +A ++A SA + A N   ADQ      + + NT++++  ++ QL
Sbjct: 394 VSKIEQVATAIHEMGMTAQEIASSANNAAENAQVADQSVNQGNQSVQNTIASVASMSEQL 453

Query: 353 QTASTAVADLDLDVKNIAKVLDVIGDIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVR 412
            T S  V+ L  D  +I  VL+VI  ++EQTNLLALNAAIEAARAGEQGRGFAVVADEVR
Sbjct: 454 LTTSETVSQLAEDASSIDTVLEVIRGVSEQTNLLALNAAIEAARAGEQGRGFAVVADEVR 513

Query: 413 NLAGRTQTSTKEIQQMIHNLQEGSRNAIQTIQICGQTSQSSVQESENAASALALIVSALE 472
            LA R+  ST++I+ +I  LQ  +   +  I      SQ S QE+  +   L  I   ++
Sbjct: 514 TLASRSHASTEDIRHIIEKLQAKTTEVVNAIGQSTNQSQQSQQEASLSGEHLHSIAENIQ 573

Query: 473 SVSSMSHQIATAAAEQTQVSDDIARRINMIEESGSKLSRVVMESHNSTQTLTKLARELEQ 532
           ++S MS QIATA  EQ+ V  +I   +  I +     S VV ++      L ++A +L +
Sbjct: 574 AMSEMSMQIATATEEQSNVVGEINPHVTAIADISRSSSDVVRQTSLDCSDLREMAVQLNE 633

Query: 533 WAAHFE 538
             + F+
Sbjct: 634 LVSRFK 639