Pairwise Alignments

Query, 541 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 638 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  186 bits (473), Expect = 2e-51
 Identities = 146/475 (30%), Positives = 228/475 (48%), Gaps = 33/475 (6%)

Query: 75  RLMRNNLYKDNEYVYVADENMTFVATPLDPQLH-DTSFHDFKDGKGNSVGRLIQDVLRHQ 133
           RL+++   +D  +VY+ D          D +LH DTS    + GK +       +V R  
Sbjct: 187 RLLKSFKIEDTGFVYLVDAKG-------DVKLHSDTS----QIGKASLSSLYGGNVTREL 235

Query: 134 SGKLVEYTWTQKQADGSIEEKLSIARKTPHWGWVVGTGIGFNEVNARFWSTAQWQLSLCV 193
             K  ++  TQ + DG  E  L  +   P   W +   +   EV A    +A   L   V
Sbjct: 236 LNK-GDFGLTQTELDG--ETLLVASSYIPSMDWYLVAQVPRAEVFALLEESAYQILVWTV 292

Query: 194 VIAVAILSLLLVAIRKILLIIGGEPNEVRSAVQAVAQGR--IRREFVIKAPKESIYGAVQ 251
           +IA A + L       +   I     +V   +Q + QG   +R+   ++   E     + 
Sbjct: 293 LIAAAFIGLSTFVSASVSQPIA----KVADMLQDIGQGEGDLRQRLPVEGNDE-----LA 343

Query: 252 QMSSSLADLVAKLEQSMVALRSELAGAGTRAKSIAELT-----DSQQQS--TAMIATAMT 304
           Q++      + K++ S++ +          AK +A        DSQ Q   T M+ TA+ 
Sbjct: 344 QLAKGFNSFIEKIQHSIIEVTDTSVQLSHAAKDVANQAQQTQDDSQLQKDQTMMVVTAIN 403

Query: 305 EMASSANQVADSARDTAFNTDQADQQSQHTQKLIHNTVSNIQGLATQLQTASTAVADLDL 364
           EM ++ +++A +A   A N   AD  S + Q ++      I  L+  ++     +  L  
Sbjct: 404 EMGATVHEIAGNAAQAADNAKDADNASSNGQIVVTRARDTINQLSQDVEQVGNVIESLAT 463

Query: 365 DVKNIAKVLDVIGDIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAGRTQTSTKE 424
              +I  +LDVI  +++QTNLLALNAAIEAARAGE GRGFAVVA+EVRNLA RT  ST E
Sbjct: 464 HTTSIGSILDVIRAVSDQTNLLALNAAIEAARAGEAGRGFAVVAEEVRNLASRTAASTDE 523

Query: 425 IQQMIHNLQEGSRNAIQTIQICGQTSQSSVQESENAASALALIVSALESVSSMSHQIATA 484
           +Q+MI NLQ  +  A++ +      SQ  VQ  + A+  L  I   + +++ M+ Q+A A
Sbjct: 524 VQKMIDNLQSEAARAVEAMTQSKSRSQEGVQAVDEASHTLTEISQQIGAITDMNIQVAAA 583

Query: 485 AAEQTQVSDDIARRINMIEESGSKLSRVVMESHNSTQTLTKLARELEQWAAHFEV 539
             EQ+ V +DI R +  I E   + S        ++Q+L +LA  L+   A F+V
Sbjct: 584 TEEQSTVVEDINRNVTEISEITQRTSETSQAVAQASQSLNQLAHRLDTLVAGFKV 638