Pairwise Alignments

Query, 541 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 634 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  191 bits (486), Expect = 5e-53
 Identities = 118/329 (35%), Positives = 183/329 (55%), Gaps = 14/329 (4%)

Query: 220 EVRSAVQAVAQGR--IRREFVIKAPKESIYGAVQQMSSSLADLVAKLEQSMVALRSELAG 277
           E  +A+  +A+G   + R   +K+  E     + Q++ +      K+  ++  +    + 
Sbjct: 311 ETTNALNDIAEGEGDLTRRIEVKSKDE-----IAQLALAFNRFAEKIHATVAQVSDSTSL 365

Query: 278 AGTRAKSIAELTDSQQQ-------STAMIATAMTEMASSANQVADSARDTAFNTDQADQQ 330
             T A+ ++ +T+  QQ        T  +ATAM EMA++  +VA +A D A     A + 
Sbjct: 366 LATSAEEMSAITNETQQMAKRQHLETEQVATAMNEMAATVQEVAHNATDAADAATHASES 425

Query: 331 SQHTQKLIHNTVSNIQGLATQLQTASTAVADLDLDVKNIAKVLDVIGDIAEQTNLLALNA 390
           ++H + L+   +S I  LA ++  A+ A+ +L+ +   I  VL VI +IA+QTNLLALNA
Sbjct: 426 TEHGKLLVEKVISTISLLADEIAHAAKAINELERNTAQIDSVLVVIRNIADQTNLLALNA 485

Query: 391 AIEAARAGEQGRGFAVVADEVRNLAGRTQTSTKEIQQMIHNLQEGSRNAIQTIQICGQTS 450
           AIEAARAGEQGRGFAVVADEVR LA RTQ ST EIQQMI  LQ  +++ + T+     T+
Sbjct: 486 AIEAARAGEQGRGFAVVADEVRTLASRTQASTSEIQQMIEALQHSAKSTVSTMNTSTATT 545

Query: 451 QSSVQESENAASALALIVSALESVSSMSHQIATAAAEQTQVSDDIARRINMIEESGSKLS 510
           Q+ V     A  AL  I  A+ ++S M+ QIA+AA EQ  VS +I + +N I +     +
Sbjct: 546 QNCVSLVHEAGEALEAITQAVSTISQMNIQIASAANEQCAVSAEINKNVNNINDITINAT 605

Query: 511 RVVMESHNSTQTLTKLARELEQWAAHFEV 539
              +++  +   L +L+  L    A F +
Sbjct: 606 ESAVQTARAGDELAQLSMRLTTLLAQFRI 634