Pairwise Alignments

Query, 541 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 630 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  200 bits (508), Expect = 2e-55
 Identities = 135/406 (33%), Positives = 217/406 (53%), Gaps = 15/406 (3%)

Query: 141 TWTQKQADGSIEEKLSIARKTPHWGWVVGTGIGFNEVNARFWSTAQWQLSLCVVIAVAIL 200
           T  +++ DG  +  L      P   W +   +   E+ ++  S A W  ++ V + V I 
Sbjct: 233 TMEERELDGGTQ--LVYVAAVPSTDWALIFVMNKQEIMSQATSLAWWMSAVGVGLLV-IF 289

Query: 201 SLLLVAIRKILLIIGGEPNEVRSAVQAVAQGRIRREFVIKAPKESIYGAVQQMSSS---- 256
            L+LVAI K+      +   V  A+  +A+G    +  ++    + +  +  ++S     
Sbjct: 290 GLVLVAIFKMQF---KDLERVALALNDIAEGD--GDLTVRIHTANSHDEIGILASGFNRF 344

Query: 257 ---LADLVAKLEQSMVALRSELAGAGTRAKSIAELTDSQQQSTAMIATAMTEMASSANQV 313
              L  +++++      L  +  G+   A   ++  + QQ    M+ATA+TEMAS+  ++
Sbjct: 345 VERLHGMISRMHNIAGQLEYQAKGSSASAADNSQRIEVQQDEVTMVATAVTEMASATEEI 404

Query: 314 ADSARDTAFNTDQADQQSQHTQKLIHNTVSNIQGLATQLQTASTAVADLDLDVKNIAKVL 373
           A +A  TA     A   S H QK +  +  +I+ LA ++ TA   +++L+   + I  +L
Sbjct: 405 ASNAEHTAQTAQNAVSLSNHGQKQVMQSQQSIRNLANEVDTAGRIISELNEHSQKINSIL 464

Query: 374 DVIGDIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAGRTQTSTKEIQQMIHNLQ 433
             I  IAEQTNLLALNAAIEAARAGEQGRGFAVVADEVR L+ RT +ST+EIQ MI  LQ
Sbjct: 465 LTISGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRVLSQRTHSSTQEIQAMIETLQ 524

Query: 434 EGSRNAIQTIQICGQTSQSSVQESENAASALALIVSALESVSSMSHQIATAAAEQTQVSD 493
           + +  A++++      +++SV ++ +A+ +L  I  A+  +S M+ QIATAA EQT V+ 
Sbjct: 525 QTAGKAVKSMTQSHDMAETSVADANSASESLLQISKAINEISDMASQIATAAEEQTSVTS 584

Query: 494 DIARRINMIEESGSKLSRVVMESHNSTQTLTKLARELEQWAAHFEV 539
           +I R    I E    LS     +   +Q L  LA  L+Q  + F++
Sbjct: 585 EINRNTESIREVSENLSIEAQSAMVQSQELAHLAASLQQEVSRFKL 630