Pairwise Alignments

Query, 541 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 554 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  196 bits (499), Expect = 1e-54
 Identities = 161/565 (28%), Positives = 269/565 (47%), Gaps = 50/565 (8%)

Query: 9   LLSAIILAALLALTATGLWTLRVASNLDNKARVTELFNSAYSILTEVEKLAQEGKMSEPE 68
           L + ++L +L  L  T L  + ++  ++ ++   E       ++T   KL  E K    E
Sbjct: 6   LRNKLLLLSLFPLIFTLLVLITLSYYVEQESLAEE-------VVTFRTKLVGERKQQIKE 58

Query: 69  AKALATRLMRNNLYKDNE----------------YVYVADENMTFVATPLDPQLHDTSFH 112
           A  +A+ ++   L   ++                Y ++ D     +   L P L   +  
Sbjct: 59  ATEIASGIVNYQLSLKDKGNVNQALRDIRFGSAGYFFMYDSQGKNIFHALMPNLEGQNKI 118

Query: 113 DFKDGKGNSVGRLIQDVLRHQSGKLVEYTWTQKQADGSIEEKLSIARKTPHWGWVVGTGI 172
           D  D +G  +   + D  +   G    Y   QK       EK+S     P   W++GTG 
Sbjct: 119 DMTDPRGTKIIVGLLDAAKRGDGNFSYYY--QKPNTNEQIEKISFVMMVPGTDWMLGTGA 176

Query: 173 GFNEVNA-----RFWSTAQW-QLSLCVVIAVAILS-----LLLVAIRKILLIIGGEPNEV 221
             +++ A     R   T Q  + SL +++   +L+     +++VA  ++++ I    + +
Sbjct: 177 YIDDIEAVVEDYRQTVTEQMAEKSLMILLIALVLTGATAFVIMVAAHRMVVPIKNMADNL 236

Query: 222 RSAVQAVAQGRIRREFVIKAPKESIYGAVQQMSSSLADLVAKLEQSMVALRSELAGAGTR 281
                A  +G + +   +K   E     + Q+  +    V KL+  +  + S  A   T 
Sbjct: 237 NDI--AKGEGDLTKRLSVKGEDE-----IAQLGRAFNLFVDKLQHIIGDVASATAKVKTA 289

Query: 282 AKSIAELTD-------SQQQSTAMIATAMTEMASSANQVADSARDTAFNTDQADQQSQHT 334
           A +I + T        S    T  + TA+TEM+S+A++VA +    A  T  A     + 
Sbjct: 290 ANAIHDQTKVMSSQLLSHNNETDQVVTAITEMSSTASEVAQNTTQVAEATQAATGDVANA 349

Query: 335 QKLIHNTVSNIQGLATQLQTASTAVADLDLDVKNIAKVLDVIGDIAEQTNLLALNAAIEA 394
           Q+ +  ++  I  L  Q+  A+ ++  L    + I  VL VIG IAEQTNLLALNAAIEA
Sbjct: 350 QRCVDASLEEIAALMEQINHAAGSIKSLSEQSQKINSVLSVIGGIAEQTNLLALNAAIEA 409

Query: 395 ARAGEQGRGFAVVADEVRNLAGRTQTSTKEIQQMIHNLQEGSRNAIQTIQICGQTSQSSV 454
           ARAGEQGRGFAVVADEVR+LA RTQ ST EI +M+  L +    A++T+    Q+   SV
Sbjct: 410 ARAGEQGRGFAVVADEVRSLASRTQASTLEINEMLSALHKLVSQAVKTMDESQQSCVRSV 469

Query: 455 QESENAASALALIVSALESVSSMSHQIATAAAEQTQVSDDIARRINMIEESGSKLSRVVM 514
           + S   + +L  + SA+ +++ MS QIATAA EQ+ V+++I R +  I+E  ++L     
Sbjct: 470 ESSRAISESLGSVTSAVTAINDMSTQIATAATEQSSVTEEINRNVYAIQEIVNELLHSSE 529

Query: 515 ESHNSTQTLTKLARELEQWAAHFEV 539
            +   +QT+++    L      F++
Sbjct: 530 HAARVSQTVSQEGTNLGNLVGQFKI 554