Pairwise Alignments

Query, 541 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 533 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  228 bits (581), Expect = 4e-64
 Identities = 166/547 (30%), Positives = 285/547 (52%), Gaps = 41/547 (7%)

Query: 7   AYLLSAIILAALLALTATGLWTLRVASNLDNKARVTELFNSAYSILTEVEKLAQEGKMSE 66
           A  L   ++ AL+ LT + + TL+     + +AR+  + + A   L+ ++ L Q   + +
Sbjct: 14  ALQLITALIGALILLTLS-VTTLKSNLMAEREARLNAVLSLA---LSRIQALQQNLPLEQ 69

Query: 67  PEAKALATRLMRNNLYKDNEYVYVADENMTFVATPLDPQLHDTSFHDFKDGKGNSVGRLI 126
             A+  A  ++ N  +  + Y++V DE    +  P+ P+L      +  +G       ++
Sbjct: 70  --AQQAAKEMLNNMRFDGDNYLFVIDETRHIIVHPVKPELVSQQMGN--NGAEQYWFSMV 125

Query: 127 QDVLRHQSGKLVEYTWTQKQADGSIEEKLSIARKTPHWGWVVGTGIGFNEVNARFWSTAQ 186
           +     Q G L +Y W     +G   +K+S+      WGW++G+GI   ++    W    
Sbjct: 126 ELGRNGQQGVL-QYPWVT--GNGKKAQKMSLVMGFKPWGWILGSGILLQDIENTIWHEYV 182

Query: 187 WQLSLCVVIAVAILSLLLVAIRKILLIIGGEPNEVRSAVQAVAQGRIRREFVIKAPKESI 246
                 +++ + + +L  +  R I+  +    ++V +A+Q +A G +  +  +    E  
Sbjct: 183 LMGGTTLILILLMAALGYIISRSIVQPL----DQVNNAMQIIATGNLTPQLAVTGKDE-- 236

Query: 247 YGAVQQMSSSLADLVAKLEQSMVALRSELAGAG----------TRAKSIAELTD----SQ 292
                     LA L   + QSM ++R+ LA A           +R  S AE T+    +Q
Sbjct: 237 ----------LAALAHNINQSMASIRTALAEANHSADNVSQAASRIASTAEETNQAVNNQ 286

Query: 293 QQSTAMIATAMTEMASSANQVADSARDTAFNTDQADQQSQHTQKLIHNTVSNIQGLATQL 352
           +   A +ATAM EM+++   VA++A  TA +T +A +++    K +H +V  I  LA ++
Sbjct: 287 RDQLAQLATAMNEMSATIADVANNAESTAKDTKEATREAGLGDKDVHASVDGIHALAKEV 346

Query: 353 QTASTAVADLDLDVKNIAKVLDVIGDIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVR 412
           + A+  V  L  ++  I++V  VI  I++QTNLLALNAAIEAARAGEQGRGFAVVADEVR
Sbjct: 347 EQATQQVNKLKEEIMQISEVTAVISAISDQTNLLALNAAIEAARAGEQGRGFAVVADEVR 406

Query: 413 NLAGRTQTSTKEIQQMIHNLQEGSRNAIQTIQICGQTSQSSVQESENAASALALIVSALE 472
            LA RT+ ST+EIQ  I  LQ+ + +A   +      ++ SV +S  A + L+LIV+ ++
Sbjct: 407 QLASRTRQSTEEIQNTISLLQQRAVSAANAMDTSRDLAEKSVDQSTKAGNDLSLIVTHIK 466

Query: 473 SVSSMSHQIATAAAEQTQVSDDIARRINMIEESGSKLSRVVMESHNSTQTLTKLARELEQ 532
            VS M+ QIATAA EQ+ V++++ R +  I  S  ++S         +++L +L+  L  
Sbjct: 467 HVSDMATQIATAAEEQSAVAEEMNRNVCGINSSALEVSESATYLAQESESLAELSLNLNN 526

Query: 533 WAAHFEV 539
             A F++
Sbjct: 527 KLAAFKL 533