Pairwise Alignments

Query, 541 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 545 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  201 bits (512), Expect = 5e-56
 Identities = 151/537 (28%), Positives = 257/537 (47%), Gaps = 11/537 (2%)

Query: 9   LLSAIILAALLALTATGLWTLRVASNLDNKA--RVTELFNSAYSILTEVEKLAQEGKMSE 66
           L+  +++AA+  +           SNL  +   ++     S  S++    + A  GK+SE
Sbjct: 14  LMMMLVMAAIGTVCFASFSIKEQYSNLIEQKWQQIDGQLGSLLSVIDIHRQDALSGKLSE 73

Query: 67  PEAKALATRLMRNNLYKDNEYVYVADENMTFVATPLDPQLHDTSFHDFKDGKGNSVGRLI 126
            EA+  A  L+    Y    Y  V D+N   +A      L  TS  +FK   G +    +
Sbjct: 74  AEAQQAAANLIDQTRYAGVGYFIVIDDNNQILAHGERSDLIGTSALNFKLQNGTNPLATM 133

Query: 127 QDVLRHQSGKLVEYTWTQKQADGSIEEKLSIARKTPHWGWVVGTGIGFNEVNARFWSTAQ 186
             + R     ++EY         +IE+KL  AR  P WGW + TG   ++V     +   
Sbjct: 134 LPLARQNGKTMLEYP-IANPVSKNIEDKLVEARYYPEWGWTLITGAYLSDVKQSLKAVII 192

Query: 187 WQLSLCVVIAVAILSLLLVAIRKILLIIGGEPNEVRSAVQAVAQGR--IRREFVIKAPKE 244
             L +  +I+V I +  LV    I   +    N+   A++ +AQG   + +    +   E
Sbjct: 193 DYLIIMFLISVPIFAFFLVLNHSITSPL----NDAIDALEDIAQGEGDLSQRLSTQGKDE 248

Query: 245 SIY--GAVQQMSSSLADLVAKLEQSMVALRSELAGAGTRAKSIAELTDSQQQSTAMIATA 302
             +   A    +  + D+V  L+    +L ++        +   +  +   + T  +ATA
Sbjct: 249 VAHLAHAFNLFAQKIGDMVGHLQPLGQSLDNDAKQLMLAVEESNQSAEHIHRETGSVATA 308

Query: 303 MTEMASSANQVADSARDTAFNTDQADQQSQHTQKLIHNTVSNIQGLATQLQTASTAVADL 362
           + +M S+ +++A + +  A   +    Q+Q +Q +I +TV + + L  +L+ +      L
Sbjct: 309 VNQMLSTTHEMASNTQQAADAANSVKNQAQQSQAVIDDTVRDTEKLVQELRASEVITQKL 368

Query: 363 DLDVKNIAKVLDVIGDIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAGRTQTST 422
                 I  +LDVI  IAEQTNLLALNAAIEAARAG  GRGFAVVADEVR LA RTQ ST
Sbjct: 369 GQSSAQIGSILDVIRSIAEQTNLLALNAAIEAARAGSHGRGFAVVADEVRALANRTQDST 428

Query: 423 KEIQQMIHNLQEGSRNAIQTIQICGQTSQSSVQESENAASALALIVSALESVSSMSHQIA 482
            EIQ++I ++Q G  + +++       S     ++  A +A+A I+  +  +S M+ Q+A
Sbjct: 429 NEIQKIISDIQMGVNSVMKSNSQTQTQSDELQAKAREAGNAMAAILQLIAHISDMNTQLA 488

Query: 483 TAAAEQTQVSDDIARRINMIEESGSKLSRVVMESHNSTQTLTKLARELEQWAAHFEV 539
           +A  EQ+ V+++I R I  I E      +    +  + Q+L  +++++      F++
Sbjct: 489 SATEEQSLVTEEINRNICNISELTEVSVKANEGNSRAAQSLQDISQDMSHTLGQFKI 545